Mir142 (microRNA 142) - Rat Genome Database
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Gene: Mir142 (microRNA 142) Mus musculus
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Symbol: Mir142
Name: microRNA 142
RGD ID: 1615487
MGI Page MGI
Description: Is expressed in several structures, including lung and nose. Orthologous to human MIR142 (microRNA 142).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: miR-1; miR-142; mir-142a; Mirn; Mirn142; mmu-mir-1; mmu-mir-142; mmu-mir-142a
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,647,690 - 87,647,753 (+)NCBIGRCm39mm39
GRCm39 Ensembl1187,647,690 - 87,647,753 (+)Ensembl
GRCm381187,756,864 - 87,756,927 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,756,864 - 87,756,927 (+)EnsemblGRCm38mm10GRCm38
MGSCv371187,570,366 - 87,570,429 (+)NCBIGRCm37mm9NCBIm37
Celera1197,352,517 - 97,352,580 (+)NCBICelera
Cytogenetic Map11CNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:12007417   PMID:12919684   PMID:14657504   PMID:16369549   PMID:16381832   PMID:16973894   PMID:17369397   PMID:17604727   PMID:18452032   PMID:18791161   PMID:19098714   PMID:19147652  
PMID:19229884   PMID:19559694   PMID:19727952   PMID:19794140   PMID:20215419   PMID:20413612   PMID:20439489   PMID:21037258   PMID:21267068   PMID:21474672   PMID:21536037   PMID:22614019  
PMID:23152889   PMID:23212522   PMID:23410519   PMID:23509362   PMID:23755214   PMID:23911199   PMID:24053976   PMID:24165894   PMID:24352241   PMID:24361879   PMID:24401604   PMID:24553287  
PMID:24835278   PMID:24859754   PMID:24928439   PMID:24967703   PMID:24974128   PMID:25931583   PMID:26098216   PMID:26107383   PMID:26327117   PMID:26436920   PMID:26690966   PMID:26784440  
PMID:27085967   PMID:27348426   PMID:27788393   PMID:27884048   PMID:27909218   PMID:28025989   PMID:28471480   PMID:29059189   PMID:29115575   PMID:29459719   PMID:29722559   PMID:29724719  
PMID:29793310   PMID:29844410   PMID:29938598   PMID:29949787   PMID:30244433   PMID:30279543   PMID:30453118   PMID:30741720   PMID:30887098   PMID:30914375   PMID:30958798   PMID:31145943  
PMID:31369265   PMID:31402259   PMID:31494298   PMID:31682635   PMID:31834525   PMID:31836704   PMID:32111926   PMID:32268073  


Genomics

Comparative Map Data
Mir142
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,647,690 - 87,647,753 (+)NCBIGRCm39mm39
GRCm39 Ensembl1187,647,690 - 87,647,753 (+)Ensembl
GRCm381187,756,864 - 87,756,927 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,756,864 - 87,756,927 (+)EnsemblGRCm38mm10GRCm38
MGSCv371187,570,366 - 87,570,429 (+)NCBIGRCm37mm9NCBIm37
Celera1197,352,517 - 97,352,580 (+)NCBICelera
Cytogenetic Map11CNCBI
MIR142
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1758,331,232 - 58,331,318 (-)EnsemblGRCh38hg38GRCh38
GRCh381758,331,232 - 58,331,318 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371756,408,593 - 56,408,679 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361753,763,591 - 53,763,677 (-)NCBINCBI36hg18NCBI36
Celera1752,870,375 - 52,870,461 (-)NCBI
Cytogenetic Map17q22NCBI
HuRef1751,769,132 - 51,769,218 (-)NCBIHuRef
CHM1_11756,473,612 - 56,473,698 (-)NCBICHM1_1
Mir142
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21072,557,864 - 72,557,950 (+)NCBI
Rnor_6.0 Ensembl1075,050,832 - 75,050,942 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01075,050,839 - 75,050,925 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01075,051,463 - 75,051,549 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1071,471,181 - 71,471,267 (+)NCBICelera
Cytogenetic Map10q26NCBI
MIR142
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl932,977,382 - 32,977,468 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1932,977,393 - 32,977,455 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR142
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1234,609,364 - 34,609,468 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11234,609,378 - 34,609,457 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21236,203,916 - 36,203,995 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Position Markers
AW909330  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381187,757,004 - 87,757,110UniSTSGRCm38
MGSCv371187,570,506 - 87,570,612UniSTSGRCm37
Celera1197,352,657 - 97,352,763UniSTS
Whitehead/MRC_RH111137.78UniSTS
Whitehead/MRC_RH111134.1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179922933104611872Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1181000000102000000Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181683655115683810Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181683655115683810Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181919441115919441Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182486872116486994Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185954085119954085Mouse
15039374Adip29_madiposity 29 (mouse)1186717494120717494Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186717494120717494Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186717494120717494Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187600000126900000Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187611774121611872Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Adcy9mmu-miR-142-3pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI19098714
Arntlmmu-miR-142-3pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI22958478
Adcy9mmu-miR-142-3pMirecordsexternal_infoNANA19098714
Il6mmu-miR-142-3pMirecordsexternal_infoNANA21474672
Ccnt2mmu-miR-142-3pOncomiRDBexternal_infoNANA22493297
Nr3c1mmu-miR-142-3pOncomiRDBexternal_infoNANA21979877
Rac1mmu-miR-142-3pOncomiRDBexternal_infoNANA21482222

Predicted Targets
Summary Value
Count of predictions:20996
Count of gene targets:8530
Count of transcripts:13858
Interacting mature miRNAs:mmu-miR-142-3p, mmu-miR-142-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000198092
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1187,756,864 - 87,756,927 (+)Ensembl
RefSeq Acc Id: NR_029555
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391187,647,690 - 87,647,753 (+)NCBI
GRCm381187,756,864 - 87,756,927 (+)ENTREZGENE
MGSCv371187,570,366 - 87,570,429 (+)RGD
Celera1197,352,517 - 97,352,580 (+)RGD
cM Map11 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676827 AgrOrtholog
Ensembl Genes ENSMUSG00000105196 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000198092 ENTREZGENE
MGD MGI:2676827 ENTREZGENE
miRBase MI0000167 ENTREZGENE
NCBI Gene 387160 ENTREZGENE
PhenoGen Mir142 PhenoGen
RNAcentral URS00001E0AEA RNACentral
  URS00002620A7 RNACentral
  URS000075B92A RNACentral