Mir142 (microRNA 142) - Rat Genome Database
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Gene: Mir142 (microRNA 142) Mus musculus
Analyze
Symbol: Mir142
Name: microRNA 142
RGD ID: 1615487
MGI Page MGI
Description: Is expressed in several structures, including lung and nose. Orthologous to human MIR142 (microRNA 142).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: miR-1; miR-142; mir-142a; Mirn; Mirn142; mmu-mir-1; mmu-mir-142; mmu-mir-142a
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,647,690 - 87,647,753 (+)NCBIGRCm39mm39
GRCm39 Ensembl1187,647,690 - 87,647,753 (+)Ensembl
GRCm381187,756,864 - 87,756,927 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,756,864 - 87,756,927 (+)EnsemblGRCm38mm10GRCm38
MGSCv371187,570,366 - 87,570,429 (+)NCBIGRCm37mm9NCBIm37
Celera1197,352,517 - 97,352,580 (+)NCBICelera
Cytogenetic Map11CNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:12007417   PMID:12919684   PMID:14657504   PMID:16369549   PMID:16381832   PMID:16973894   PMID:17369397   PMID:17604727   PMID:18452032   PMID:18791161   PMID:19098714   PMID:19147652  
PMID:19229884   PMID:19559694   PMID:19727952   PMID:19794140   PMID:20215419   PMID:20413612   PMID:20439489   PMID:21037258   PMID:21267068   PMID:21474672   PMID:21536037   PMID:22614019  
PMID:23152889   PMID:23212522   PMID:23410519   PMID:23509362   PMID:23755214   PMID:23911199   PMID:24053976   PMID:24165894   PMID:24352241   PMID:24361879   PMID:24401604   PMID:24553287  
PMID:24835278   PMID:24859754   PMID:24928439   PMID:24967703   PMID:24974128   PMID:25931583   PMID:26098216   PMID:26107383   PMID:26327117   PMID:26436920   PMID:26690966   PMID:26784440  
PMID:27085967   PMID:27348426   PMID:27788393   PMID:27884048   PMID:27909218   PMID:28025989   PMID:28471480   PMID:29059189   PMID:29115575   PMID:29459719   PMID:29722559   PMID:29724719  
PMID:29793310   PMID:29844410   PMID:29938598   PMID:29949787   PMID:30244433   PMID:30279543   PMID:30453118   PMID:30741720   PMID:30887098   PMID:30914375   PMID:30958798   PMID:31145943  
PMID:31369265   PMID:31402259   PMID:31494298   PMID:31682635   PMID:31834525   PMID:31836704   PMID:32111926   PMID:32268073  


Genomics

Comparative Map Data
Mir142
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,647,690 - 87,647,753 (+)NCBIGRCm39mm39
GRCm39 Ensembl1187,647,690 - 87,647,753 (+)Ensembl
GRCm381187,756,864 - 87,756,927 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,756,864 - 87,756,927 (+)EnsemblGRCm38mm10GRCm38
MGSCv371187,570,366 - 87,570,429 (+)NCBIGRCm37mm9NCBIm37
Celera1197,352,517 - 97,352,580 (+)NCBICelera
Cytogenetic Map11CNCBI
MIR142
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1758,331,232 - 58,331,318 (-)EnsemblGRCh38hg38GRCh38
GRCh381758,331,232 - 58,331,318 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371756,408,593 - 56,408,679 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361753,763,591 - 53,763,677 (-)NCBINCBI36hg18NCBI36
Celera1752,870,375 - 52,870,461 (-)NCBI
Cytogenetic Map17q22NCBI
HuRef1751,769,132 - 51,769,218 (-)NCBIHuRef
CHM1_11756,473,612 - 56,473,698 (-)NCBICHM1_1
Mir142
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21072,557,864 - 72,557,950 (+)NCBI
Rnor_6.0 Ensembl1075,050,832 - 75,050,942 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01075,050,839 - 75,050,925 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01075,051,463 - 75,051,549 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1071,471,181 - 71,471,267 (+)NCBICelera
Cytogenetic Map10q26NCBI
MIR142
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl932,977,382 - 32,977,468 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1932,977,393 - 32,977,455 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR142
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1234,609,364 - 34,609,468 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11234,609,378 - 34,609,457 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21236,203,916 - 36,203,995 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Position Markers
AW909330  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381187,757,004 - 87,757,110UniSTSGRCm38
MGSCv371187,570,506 - 87,570,612UniSTSGRCm37
Celera1197,352,657 - 97,352,763UniSTS
Whitehead/MRC_RH111137.78UniSTS
Whitehead/MRC_RH111134.1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179922933104611872Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1181000000102000000Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181683655115683810Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181683655115683810Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181919441115919441Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182486872116486994Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185954085119954085Mouse
15039374Adip29_madiposity 29 (mouse)1186717494120717494Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186717494120717494Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186717494120717494Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187600000126900000Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187611774121611872Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Adcy9mmu-miR-142-3pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI19098714
Arntlmmu-miR-142-3pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI22958478
Adcy9mmu-miR-142-3pMirecordsexternal_infoNANA19098714
Il6mmu-miR-142-3pMirecordsexternal_infoNANA21474672
Ccnt2mmu-miR-142-3pOncomiRDBexternal_infoNANA22493297
Nr3c1mmu-miR-142-3pOncomiRDBexternal_infoNANA21979877
Rac1mmu-miR-142-3pOncomiRDBexternal_infoNANA21482222

Predicted Targets
Summary Value
Count of predictions:20996
Count of gene targets:8530
Count of transcripts:13858
Interacting mature miRNAs:mmu-miR-142-3p, mmu-miR-142-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000198092
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1187,756,864 - 87,756,927 (+)Ensembl
RefSeq Acc Id: NR_029555
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391187,647,690 - 87,647,753 (+)NCBI
GRCm381187,756,864 - 87,756,927 (+)ENTREZGENE
MGSCv371187,570,366 - 87,570,429 (+)RGD
Celera1197,352,517 - 97,352,580 (+)RGD
cM Map11 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676827 AgrOrtholog
Ensembl Genes ENSMUSG00000105196 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000198092 ENTREZGENE
MGD MGI:2676827 ENTREZGENE
miRBase MI0000167 ENTREZGENE
NCBI Gene 387160 ENTREZGENE
PhenoGen Mir142 PhenoGen
RNAcentral URS00001E0AEA RNACentral
  URS00002620A7 RNACentral
  URS000075B92A RNACentral