Mir142 (microRNA 142) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Mir142 (microRNA 142) Mus musculus
Analyze
Symbol: Mir142
Name: microRNA 142
RGD ID: 1615487
MGI Page MGI
Description: Acts upstream of or within several processes, including cellular response to estrogen stimulus; cellular response to leukemia inhibitory factor; and cellular response to lipopolysaccharide. Is expressed in several structures, including lung and nose. Orthologous to human MIR142 (microRNA 142).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: miR-1; miR-142; mir-142a; Mirn; Mirn142; mmu-mir-1; mmu-mir-142; mmu-mir-142a
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,647,690 - 87,647,753 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1187,647,690 - 87,647,753 (+)EnsemblGRCm39 Ensembl
GRCm381187,756,864 - 87,756,927 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,756,864 - 87,756,927 (+)EnsemblGRCm38mm10GRCm38
MGSCv371187,570,366 - 87,570,429 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1197,352,517 - 97,352,580 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1152.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Differential miRNA Expression in the Liver of Balb/c Mice Protected by Vaccination during Crisis of Plasmodium chabaudi Blood-Stage Malaria. Dkhil MA, etal., Front Microbiol. 2017 Jan 11;7:2155. doi: 10.3389/fmicb.2016.02155. eCollection 2016.
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. microRNA-9 and -29a regulate the progression of diabetic peripheral neuropathy via ISL1-mediated sonic hedgehog signaling pathway. Sun Q, etal., Aging (Albany NY). 2020 Jun 16;12(12):11446-11465. doi: 10.18632/aging.103230. Epub 2020 Jun 16.
Additional References at PubMed
PMID:12007417   PMID:12919684   PMID:14657504   PMID:16369549   PMID:16381832   PMID:16973894   PMID:17369397   PMID:17604727   PMID:18452032   PMID:18791161   PMID:19098714   PMID:19147652  
PMID:19229884   PMID:19559694   PMID:19727952   PMID:19794140   PMID:20215419   PMID:20413612   PMID:20439489   PMID:21037258   PMID:21267068   PMID:21474672   PMID:21536037   PMID:22614019  
PMID:23152889   PMID:23212522   PMID:23410519   PMID:23509362   PMID:23755214   PMID:23911199   PMID:24053976   PMID:24165894   PMID:24352241   PMID:24361879   PMID:24401604   PMID:24553287  
PMID:24835278   PMID:24859754   PMID:24928439   PMID:24967703   PMID:24974128   PMID:25931583   PMID:26098216   PMID:26107383   PMID:26327117   PMID:26436920   PMID:26690966   PMID:26784440  
PMID:27085967   PMID:27348426   PMID:27788393   PMID:27884048   PMID:27894934   PMID:27909218   PMID:28025989   PMID:28471480   PMID:29059189   PMID:29115575   PMID:29459719   PMID:29722559  
PMID:29724719   PMID:29793310   PMID:29844410   PMID:29938598   PMID:29949787   PMID:30081710   PMID:30244433   PMID:30279543   PMID:30453118   PMID:30741720   PMID:30887098   PMID:30914375  
PMID:30958798   PMID:31145943   PMID:31369265   PMID:31402259   PMID:31494298   PMID:31682635   PMID:31834525   PMID:31836704   PMID:31938072   PMID:32111926   PMID:32224251   PMID:32268073  
PMID:32277570   PMID:32327611   PMID:32413869   PMID:32524675   PMID:32616346   PMID:32652747   PMID:32700780   PMID:33204326   PMID:33555315   PMID:34021046   PMID:34461809   PMID:34486705  
PMID:34906656   PMID:35180231   PMID:35239453   PMID:36439112   PMID:36945113   PMID:37021418   PMID:37209404   PMID:37658085   PMID:38393528   PMID:38741041   PMID:39259911  


Genomics

Comparative Map Data
Mir142
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,647,690 - 87,647,753 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1187,647,690 - 87,647,753 (+)EnsemblGRCm39 Ensembl
GRCm381187,756,864 - 87,756,927 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,756,864 - 87,756,927 (+)EnsemblGRCm38mm10GRCm38
MGSCv371187,570,366 - 87,570,429 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1197,352,517 - 97,352,580 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1152.21NCBI
MIR142
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381758,331,232 - 58,331,318 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1758,331,232 - 58,331,318 (-)EnsemblGRCh38hg38GRCh38
GRCh371756,408,593 - 56,408,679 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361753,763,591 - 53,763,677 (-)NCBINCBI36Build 36hg18NCBI36
Celera1752,870,375 - 52,870,461 (-)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1751,769,132 - 51,769,218 (-)NCBIHuRef
CHM1_11756,473,612 - 56,473,698 (-)NCBICHM1_1
T2T-CHM13v2.01759,199,112 - 59,199,198 (-)NCBIT2T-CHM13v2.0
Mir142
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81073,055,104 - 73,055,190 (+)NCBIGRCr8
mRatBN7.21072,557,864 - 72,557,950 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1072,557,857 - 72,557,967 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1077,168,325 - 77,168,411 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01076,673,273 - 76,673,359 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01072,137,779 - 72,137,865 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01075,050,839 - 75,050,925 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1075,050,832 - 75,050,942 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01075,051,463 - 75,051,549 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1071,471,181 - 71,471,267 (+)NCBICelera
Cytogenetic Map10q26NCBI
MIR142
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1932,977,393 - 32,977,455 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl932,977,382 - 32,977,468 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha932,214,360 - 32,214,422 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0933,784,007 - 33,784,069 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl933,783,996 - 33,784,082 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1932,570,169 - 32,570,231 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0932,853,667 - 32,853,729 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0932,947,095 - 32,947,157 (-)NCBIUU_Cfam_GSD_1.0
MIR142
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1234,609,364 - 34,609,468 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11234,609,378 - 34,609,457 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21236,203,916 - 36,203,995 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:20996
Count of gene targets:8530
Count of transcripts:13858
Interacting mature miRNAs:mmu-miR-142-3p, mmu-miR-142-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
15092049Wsigrme3_mweek six growth rate, maternal effect 3 (mouse)118487732496629512Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
15092057Lgrme3_mlate growth rate, maternal effect 3 (mouse)118487732496629512Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse

Markers in Region
AW909330  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381187,757,004 - 87,757,110UniSTSGRCm38
MGSCv371187,570,506 - 87,570,612UniSTSGRCm37
Celera1197,352,657 - 97,352,763UniSTS
Whitehead/MRC_RH111137.78UniSTS
Whitehead/MRC_RH111134.1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000198092
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1187,647,690 - 87,647,753 (+)Ensembl
GRCm38.p6 Ensembl1187,756,864 - 87,756,927 (+)Ensembl
RefSeq Acc Id: NR_029555
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391187,647,690 - 87,647,753 (+)NCBI
GRCm381187,756,864 - 87,756,927 (+)ENTREZGENE
MGSCv371187,570,366 - 87,570,429 (+)RGD
Celera1197,352,517 - 97,352,580 (+)RGD
cM Map11 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676827 AgrOrtholog
Ensembl Genes ENSMUSG00000105196 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000198092 ENTREZGENE
MGD MGI:2676827 ENTREZGENE
miRBase MI0000167 ENTREZGENE
NCBI Gene 387160 ENTREZGENE
PhenoGen Mir142 PhenoGen
RNAcentral URS00001E0AEA RNACentral
  URS00002620A7 RNACentral
  URS000075B92A RNACentral