Krtap22-2 (keratin associated protein 22-2) - Rat Genome Database

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Gene: Krtap22-2 (keratin associated protein 22-2) Mus musculus
Analyze
Symbol: Krtap22-2
Name: keratin associated protein 22-2
RGD ID: 1615096
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110032D16Rik
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391688,807,268 - 88,807,647 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1688,807,283 - 88,807,647 (-)EnsemblGRCm39 Ensembl
GRCm381689,010,380 - 89,010,759 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1689,010,395 - 89,010,759 (-)EnsemblGRCm38mm10GRCm38
MGSCv371689,010,625 - 89,011,004 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361688,899,239 - 88,899,618 (-)NCBIMGSCv36mm8
Celera1689,215,702 - 89,216,081 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:15385554   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Krtap22-2
21 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:63
Interacting mature miRNAs:65
Transcripts:ENSMUST00000178913
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166912761198008968Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166925448298008968Mouse
1300928Etia_methanol induced activation (mouse)Not determined166331390797314016Mouse
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166160864495608764Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166907613298008968Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000178913   ⟹   ENSMUSP00000137005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1688,807,283 - 88,807,647 (-)Ensembl
GRCm38.p6 Ensembl1689,010,395 - 89,010,759 (-)Ensembl
RefSeq Acc Id: NM_001191018   ⟹   NP_001177947
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391688,807,268 - 88,807,647 (-)NCBI
GRCm381689,010,380 - 89,010,759 (-)ENTREZGENE
Celera1689,215,702 - 89,216,081 (-)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001177947 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000137005
  ENSMUSP00000137005.2
RefSeq Acc Id: NP_001177947   ⟸   NM_001191018
- UniProtKB: J3QNX6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000137005   ⟸   ENSMUST00000178913

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-J3QNX6-F1-model_v2 AlphaFold J3QNX6 1-67 view protein structure

Promoters
RGD ID:13674360
Promoter ID:EPDNEW_M21329
Type:multiple initiation site
Name:Krtap22-2_1
Description:Mus musculus keratin associated protein 22-2 (Krtap22-2), mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381689,010,765 - 89,010,825EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000095992 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000178913 ENTREZGENE
  ENSMUST00000178913.3 UniProtKB/TrEMBL
KEGG Report mmu:68740 UniProtKB/TrEMBL
MGD MGI:1915990 ENTREZGENE
NCBI Gene 68740 ENTREZGENE
PhenoGen Krtap22-2 PhenoGen
UniProt J3QNX6 ENTREZGENE, UniProtKB/TrEMBL