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Gene: Skida1 (SKI/DACH domain containing 1) Mus musculus

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Symbol:

Skida1

Name:

SKI/DACH domain containing 1

RGD ID:

1615051

MGI Page

MGI

Description:

Is expressed in several structures, including body cavity or lining; genitourinary system; nervous system; respiratory system; and vertebral axis musculature. Orthologous to human SKIDA1 (SKI/DACH domain containing 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2810030E01Rik; 5730507N06Rik; BB088113; DLN-1; MGC59463; protein DLN-1; RIKEN cDNA 5730507N06 gene; RP23-350C1.5; SKI/DACH domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SKIDA1 (SKI/DACH domain containing 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Skida1 (SKI/DACH domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Skida1 (SKI/DACH domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SKIDA1 (SKI/DACH domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SKIDA1 (SKI/DACH domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Skida1 (SKI/DACH domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SKIDA1 (SKI/DACH domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SKIDA1 (SKI/DACH domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Skida1 (SKI/DACH domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Skida1 (SKI/DACH domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SKIDA1 (SKI/DACH domain containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	skida1 (SKI/DACH domain containing 1)	Alliance	DIOPT (ZFIN)
Xenopus tropicalis (tropical clawed frog):	skida1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	18,048,510 - 18,053,627 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	18,045,487 - 18,053,862 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	18,044,087 - 18,048,449 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	18,040,676 - 18,049,051 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	17,965,714 - 17,970,076 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	17,962,998 - 17,966,805 (-)	NCBI		MGSCv36	mm8
Celera	2	17,940,919 - 17,945,928 (-)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	12.83	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (ISO)

acetaldehyde (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

fulvestrant (ISO)

lead(0) (ISO)

mercury dibromide (ISO)

methylisothiazolinone (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nickel atom (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

paraquat (ISO)

phenylmercury acetate (ISO)

propanal (ISO)

quercetin (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (EXP)

silver(0) (EXP)

sodium arsenite (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thioacetamide (ISO)

thiram (ISO)

trichostatin A (ISO)

triptonide (EXP)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal uterus morphology (IEA)

abnormal vertebral arch morphology (IEA)

decreased erythrocyte cell number (IEA)

decreased hematocrit (IEA)

decreased hemoglobin content (IEA)

enlarged lymph nodes (IEA)

enlarged thymus (IEA)

increased circulating thyroxine level (IEA)

increased mean corpuscular hemoglobin (IEA)

increased mean corpuscular hemoglobin concentration (IEA)

preweaning lethality, incomplete penetrance (IEA)

small spleen (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:18799693	PMID:21267068	PMID:21677750
PMID:24194600	PMID:27626380	PMID:30973865	PMID:33953184	PMID:37196079	PMID:38355793

Genomics

Comparative Map Data

Skida1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	18,048,510 - 18,053,627 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	18,045,487 - 18,053,862 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	18,044,087 - 18,048,449 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	18,040,676 - 18,049,051 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	17,965,714 - 17,970,076 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	17,962,998 - 17,966,805 (-)	NCBI		MGSCv36	mm8
Celera	2	17,940,919 - 17,945,928 (-)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	12.83	NCBI

SKIDA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	21,513,475 - 21,525,682 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	21,513,475 - 21,526,368 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	21,802,404 - 21,814,611 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	21,842,413 - 21,854,617 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	10	21,490,230 - 21,502,423 (-)	NCBI		Celera
Cytogenetic Map	10	p12.31	NCBI
HuRef	10	21,464,647 - 21,476,702 (-)	NCBI		HuRef
CHM1_1	10	21,803,210 - 21,815,425 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	21,532,596 - 21,548,235 (-)	NCBI		T2T-CHM13v2.0

Skida1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	85,706,693 - 85,717,499 (-)	NCBI		GRCr8
mRatBN7.2	17	80,798,241 - 80,809,062 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	80,803,716 - 80,806,463 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	84,274,362 - 84,278,897 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	88,109,776 - 88,114,311 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	82,133,666 - 82,138,194 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	84,827,089 - 84,834,838 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	84,827,426 - 84,830,185 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	86,556,007 - 86,560,119 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	92,226,867 - 92,229,856 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	80,086,433 - 80,093,217 (-)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

Skida1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	7,184,430 - 7,187,146 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	7,181,234 - 7,187,309 (+)	NCBI	ChiLan1.0	ChiLan1.0

SKIDA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	34,198,352 - 34,209,272 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	34,200,663 - 34,214,597 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	21,672,675 - 21,687,603 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	21,971,672 - 21,974,800 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

SKIDA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	11,610,900 - 11,616,918 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	11,614,067 - 11,616,752 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	10,306,804 - 10,310,220 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	9,864,456 - 9,867,878 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	9,864,963 - 9,867,713 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	9,176,491 - 9,179,901 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	9,260,982 - 9,264,398 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	9,437,117 - 9,440,533 (+)	NCBI		UU_Cfam_GSD_1.0

Skida1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	21,573,359 - 21,577,984 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936520	6,383,058 - 6,385,820 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936520	6,382,818 - 6,385,984 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SKIDA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	53,332,035 - 53,334,758 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	53,330,141 - 53,338,359 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	59,047,465 - 59,051,023 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SKIDA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	21,318,253 - 21,330,920 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	21,319,884 - 21,322,613 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	27,048,790 - 27,061,436 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Skida1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624796	6,964,545 - 6,967,331 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624796	6,958,510 - 6,970,092 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Skida1
167 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1084
Count of miRNA genes:	642
Interacting mature miRNAs:	772
Transcripts:	ENSMUST00000066885, ENSMUST00000091420, ENSMUST00000142856, ENSMUST00000152908, ENSMUST00000173604
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552707	Cia23_m	collagen induced arthritis QTL 23 (mouse)			Not determined		2	12129537	66556453	Mouse
4142333	Tgq10_m	triglyceride QTL 10 (mouse)			Not determined			1	25324559	Mouse
12904743	Carcdq3_m	cardiac collagen deposition QTL 3 (mouse)					2	3234940	28179150	Mouse
1300624	Insq7_m	insulin QTL 7 (mouse)			Not determined		2	9384446	43384575	Mouse
1301790	Pcfm1_m	periosteal circumference and femur length 1 (mouse)			Not determined		2	8236296	42236396	Mouse
1301980	Fcsa5_m	femoral cross-sectional area 5 (mouse)			Not determined		2	7679115	41679261	Mouse
4141836	Tgq11_m	triglyceride QTL 11 (mouse)			Not determined			1	25324559	Mouse
10045633	Heal15_m	wound healing/regeneration 15 (mouse)			Not determined		2	1	21989642	Mouse
1301769	Orgwq2_m	organ weight QTL 2 (mouse)			Not determined		2	3887126	93421651	Mouse
1301641	Sbmd2_m	spinal bone mineral density 2 (mouse)			Not determined		2	14214567	48214713	Mouse
1301838	Sluc16_m	susceptibility to lung cancer 16 (mouse)			Not determined		2	1	26529589	Mouse
10043876	Adip22_m	adiposity 22 (mouse)			Not determined		2	8308051	42308240	Mouse
10755513	Amzn4_m	anatomical modifier of Zfp423 4 (mouse)					2	9384446	43384575	Mouse
12903993	Opfaq1_m	open field activity QTL 1 (mouse)					2	9676691	27022642	Mouse

Markers in Region

BB088113

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	18,043,724 - 18,043,852	UniSTS	GRCm38
MGSCv37	2	17,965,351 - 17,965,479	UniSTS	GRCm37
Celera	2	17,940,556 - 17,940,684	UniSTS
Cytogenetic Map	2	A2	UniSTS
Whitehead/MRC_RH	2	308.01	UniSTS

BB097487

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	18,044,464 - 18,044,582	UniSTS	GRCm38
MGSCv37	2	17,966,091 - 17,966,209	UniSTS	GRCm37
Celera	2	17,941,296 - 17,941,414	UniSTS
Cytogenetic Map	2	A2	UniSTS
Whitehead/MRC_RH	2	308.17	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_028317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK012843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK017757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK034607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK047306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK141728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL928589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC050860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE991515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ771333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB247040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000066885 ⟹ ENSMUSP00000068520

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	18,050,064 - 18,053,260 (-)	Ensembl
GRCm38.p6 Ensembl	2	18,045,253 - 18,048,449 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000091420 ⟹ ENSMUSP00000088982

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	18,048,894 - 18,053,862 (-)	Ensembl
GRCm38.p6 Ensembl	2	18,044,083 - 18,049,051 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000142856 ⟹ ENSMUSP00000122112

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	18,052,527 - 18,053,595 (-)	Ensembl
GRCm38.p6 Ensembl	2	18,047,716 - 18,048,784 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000152908 ⟹ ENSMUSP00000114785

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	18,052,955 - 18,053,842 (-)	Ensembl
GRCm38.p6 Ensembl	2	18,048,144 - 18,049,031 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000173604

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	18,045,487 - 18,049,383 (-)	Ensembl
GRCm38.p6 Ensembl	2	18,040,676 - 18,044,572 (-)	Ensembl

RefSeq Acc Id:

NM_028317 ⟹ NP_082593

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	18,048,510 - 18,053,627 (-)	NCBI
GRCm38	2	18,044,087 - 18,048,449 (-)	NCBI
MGSCv37	2	17,965,714 - 17,970,076 (-)	RGD
Celera	2	17,940,919 - 17,945,928 (-)	RGD
cM Map	2		ENTREZGENE

Sequence:

show sequence

GATGCCTTGAGACACACGCAGCATCTGGCGGAGGATTAACATACATACATGTGTATGTATGCGT
CACGTATATATTTACTGCAAATGGTGGGGATCATTTAGTGCCCGAGATGGGAGACCTGAAGTCA
GGTTTCGAAGAGGTGGATGGCGTGAGGCTCGGCTACCTCATCATTAAAGGGAAGCAAATGTTTG
CTCTCTCCCAAGTCTTCACAGATCTGCTGAAAAACATCCCGAGGACGACCGTGCACAAGCGCAT
GGATCATCTGAAAGTGAAAAAGCACCACTGCGATCTGGAGGAGTTGCGGAAACTCAAAGCAATC
AACAGTATCGCCTTCCACGCGGCCAAATGCACGCTCATCTCCCGGGAAGACGTAGAAGCGCTCT
ACACATCCTGCAAAACCGAGCGTGTGCTCAAGACCAAGCGAAGGAGAGTCGGTCGGGCCCTGGC
CACAAAGGCGCCGCCGCCAGAGCGCGCCGCCGCCGCCAGCCCCCGCCCGGCTTTTTGGAAGGAC
AAGCACCAACTTTGGCGGGGCCTGAGCGGAGCCGCGCGGCCCCTGCCAATCAGCGCGCAGTCCC
AGCGTCCGGGCGCCGCCGCCGCGCGCCCCGCCGCCCATCTACCTCAGATTTTTAGCAAATACCC
GGGCTCCCACTACCCGGAGATCGTTCGCTCGCCTTGCAAATCCTCTTTAAACTATGAAACTGCC
CAGCTCCAGGGAAACTACGTCGCCTTCCACTCGGACCCCGCTTATTTTCGGAGCCTGCTGTGCA
GCAAGCACCCGGCTGCAGCCGCCGCCGCCGCCGCCGCCGCTGCTGCTGCCGCCGCCGCCGCCGC
CTACTACCAGACTGCCGGGCCTCAGCCCAAGGCGGCGACCGGCGCGGGAGGCCCAGTGAGCCTG
ACTTACCGCTGCAAGCGCAAGCGCGGGGGCGCCAAGAACTGCCTGCTCCCGCCTCACGCCGGAG
CCCGGCGCCTGCTGCTGCTGCCCAGATCCTACAAAGCCAAGGCGGCGGCGGCGGCAGCAGCGGC
GGCTGCTGCTGCGGCGGCGGCGGCCGGGGCCACTTGCTTGGAGAGGTTTCATCTGGTCAACAGC
TTCTGCCCGCCTCCCCACCACCACCATCACCATCACCACCATCATCATCACCATCACCACCGAG
CCCAGCAGCCAACGCCGAGTCACCACCCCTCTCATCACCACCGGCCGCAACCCCATCTAGGAAG
CTTTCCCGAGAGTTGTAGCAGCGACTCCGAGTCCAGCTCCTACTCCGACCATGCAGCCAATGAC
TCGGATTTTGGCTCCAGTTTGTCCAGCTCCAGCAACTCGGTGTCCTCAGAGGAAGAGGAGGAGG
AAGGAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGGGGGCAGCGGGGCCTCGGATTCCAG
TGAAATCAGCTCGGAGGAGGAGGATTCTTCCACCGAGTCAGACTCCAGCTCCGGGTCCAGCCAA
GTGTCAGTGCAGAGCATCCGTTTCAGGCGCACCAGCTTCTGCAAGCCTCCCAGCGTGCAGGCGC
AGGCCAACTTCTTGTACCATCTGGCCTCCGCCGCCGCTGCAACCAAACCCGCTGCTTTCGAGGA
TGCCGGCCGACTTCCCGACCTCAAGAGTAGTGTCAAAGCCGAGTCACCAGAGGAGTGGAGTCTG
CAGAGCTGGGCTCCCAAAGGGACTCCGGTGTACTGCCCGGCCAGCTTGGGGAGTTGTTTCCCAG
AGATAAGAAACGATAGGGTATCTGAGATTACATTCCCACACTCTGAAATATCCAGTACTGTAAA
GAGAACTGACCTGACAATTAACTGCCATGCAGAGGGGGCCTCTTCACCTAGCCCAAAGACAAAC
AATGTATTTCCACAACAAAGAATACTCCGAGAGGCTAGGAAATGCCTACAAGCAACTCCTACTA
CACACTGTGCAGAAAACAGCACAATAGCTGCTAGGTTCTTAAATAATGATTCGTGTGGAACAAC
AGCAAATTCAGGAAAAGATTCCAAAATCCCTCATTGTCCTGAATTTGCTACGGATTTACCCTCT
CTTCAAAGTGATCCCAGAGTGGATACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACTAAAG
CTGAGAGTCTCTGCACTGGTACAGGTGACAAGACATTGCCATTTCTGCACAATATTAAAATCAA
AGTAGAAGACAGTAGTGCTAATGAAGAATATGAACCTGAGCTTATTACAAATAAGCTAAAGTGG
GAGTGCAATGATGCCGAGGGTGAGTTTTACAATATGACTGAGAAGAAGGAGGAGGACGCCTTGG
TACCCACAGCCAAGGAAGGTTTTGCATGCCCTGAGAAAGAAACGCCTTCCTTAAATCCACTGGC
TCAGAGTCAGGGCCTCTCATGCACTTTAGGATCTCCAAAACCTGAGGATGGGGAATATAAATTT
GGTGCCAGGGTGAGAAAAAATTACCGGACACTAGTACTGGGCAAACGACCAGTCCTTCAGACAC
CTCCAGTCAAACCAAATTTGAAATCAGCTAGAAGCCCTCGTCCTACAGGTAAAACTGAGACACA
TGAAGGAACACTGGATGACTTTACAGTTTTAAACAGACGCAAAAAGGTAGCCAGCAATGTAGCA
TCAGCAGTGAAAAGGCCATTTAATTTCATGGCAAATTTTCCTTGTCCACCTTCACTCATTATTG
GGAAGGATGGGGATTTGTGGCCAGCGTATTCCTTAAACACCACTAAGGATTCCCAACCTCCTCA
CAAGGCCCATCCTATATGGAAATGGCAGCTGGGCGGTTCTGCAATACCTCTTCCACCTAGTCAC
AAATTCAGGAAATTTAATTCATAAAAAAATGTTTTGGAAGATATTTTCTCGAACCATATTACCT
TCCTTTTGTTGTAAACTGCACAGGATGGCTTGTACCAAGTCCATTAATGGTGTTACACCCCTTT
TGGAGTCCTGGTTTATCGCATTTTGAAGACAAAAATCGGATTACTTTTTTTTCCCATTGCGGGT
TGTTTTTTTTTTTTTTTTATGGTGGGGGAGGGGTGGGAGAAGGGTTGGTTTACATACCACAGAC
TACTTCAGGCTAAAGACTCAAGTAACACTCAGTTATTATGGTAGAGCTGGAACACTTTACTGTT
TCAATGGTAATAATGCACCGGTACCTCAATTCAACTGCTACAAATAAATGTCAAAAGGTTGAAT
AATAAATATCACAATGAGCCATTAAGTTTATGCACTAGATTTCAGACCTGAAAGTGTAACTGGT
ATTCAGTGAAAGTTTGTTAGGTTACATGGTTACACAATGAGGTAGCAAGAAGTTTCTGTGAGCC
CAAATGTAATTTTCTGGAGCTCTTATTTGTGGGGTGTCTTTTTTATTTTTTTTCTAAACCCAGA
TTCCCTTTCCAATAGTAGTTGCACTTAACTGTTTTTTTGTTTTGTTTTGTTTTGTTTTTTAATG
GAAAGATTGGGGGTCTGAGTCCTGATTGGATGCTGATTTAAAAGCTGCCCATTGTGTGAGAAGT
AAAAAAATACTTTTTTTTTTTTAACCTTTACAGTCACTCCTTGCAACTGGAAAAGCCCCTTCTG
CGCTCTCACCCAAACATTTAAAATAGGATGACTCTTGCTGTGCTCCTGCTTGTCTTCTGATCTG
AAGATAACTCTTCAAGCTTTCAAAACAATTAAAACATTTCTCTTAATAGCAGGATGTTTAATGG
TCTAACTCATCCTAGTGTCCAAGCAGTAAATACAACCAAGAAAAAGAGTCATAACACCCCAAGT
GAAAAATAACTGATTTCAGGGCTTTTTGGTATTAGAACTCAGGCACTTGGATTTTATTACCTTA
TGCTTTTTTTTTTCTGCATCTCTCTAAACTTCTGTTTCAGGCCATCCTGTGTATAGAACAGGAG
AGTTTCTACTGCAAGTGACAATCAGAGGTGACTATCTATATTTGCACTTAAAATCAAAGTAGTT
CCACAGGCAAGTGGTCTAGCCCTTGGTGAGGCCATGCTGGTGGACTGTGTTGTAAAGATGAGAG
CAGTAAATCAAAATTATGGAAATTTGCACTGTTGAAAAGCATGCTTTAGCTTTATTTTCAATTA
AAAACACTGTTTAAAATTCCTGGTTCCATACATTTCTACTTATTCCAGATTGAAGAAGGGTTAA
CAAGAATGAATGGCTTTGTTGACATTTTCACTTGTAATGTTTTTGCCTGAAAGAAATGCATTTA
TTGGGTGCAGTGTTTTGTGGTAATACTTTGTGATGAGACCAATCAGGTTCTGGGCACAACACTG
GCAAACTTCCTCTCAAATAACAGAAAAACTTTTCAAACTTGTTATAGGCCAACTATTAAAAAGT
TTCATATCTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_082593	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH50860	(Get FASTA)	NCBI Sequence Viewer
	BAB28505	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000088982
	ENSMUSP00000088982.6
	ENSMUSP00000114785.2
	ENSMUSP00000122112.2
GenBank Protein	Q80YR3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_082593 ⟸ NM_028317

- UniProtKB:

Q80YR3 (UniProtKB/Swiss-Prot), Q9CSH2 (UniProtKB/Swiss-Prot), A6PWY2 (UniProtKB/Swiss-Prot), A6PWY1 (UniProtKB/Swiss-Prot), G3X9M2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGDLKSGFEEVDGVRLGYLIIKGKQMFALSQVFTDLLKNIPRTTVHKRMDHLKVKKHHCDLEEL
RKLKAINSIAFHAAKCTLISREDVEALYTSCKTERVLKTKRRRVGRALATKAPPPERAAAASPR
PAFWKDKHQLWRGLSGAARPLPISAQSQRPGAAAARPAAHLPQIFSKYPGSHYPEIVRSPCKSS
LNYETAQLQGNYVAFHSDPAYFRSLLCSKHPAAAAAAAAAAAAAAAAAAYYQTAGPQPKAATGA
GGPVSLTYRCKRKRGGAKNCLLPPHAGARRLLLLPRSYKAKAAAAAAAAAAAAAAAAGATCLER
FHLVNSFCPPPHHHHHHHHHHHHHHHRAQQPTPSHHPSHHHRPQPHLGSFPESCSSDSESSSYS
DHAANDSDFGSSLSSSSNSVSSEEEEEEGEEEEEEEEEEEGGSGASDSSEISSEEEDSSTESDS
SSGSSQVSVQSIRFRRTSFCKPPSVQAQANFLYHLASAAAATKPAAFEDAGRLPDLKSSVKAES
PEEWSLQSWAPKGTPVYCPASLGSCFPEIRNDRVSEITFPHSEISSTVKRTDLTINCHAEGASS
PSPKTNNVFPQQRILREARKCLQATPTTHCAENSTIAARFLNNDSCGTTANSGKDSKIPHCPEF
ATDLPSLQSDPRVDTATAAAAAAAATKAESLCTGTGDKTLPFLHNIKIKVEDSSANEEYEPELI
TNKLKWECNDAEGEFYNMTEKKEEDALVPTAKEGFACPEKETPSLNPLAQSQGLSCTLGSPKPE
DGEYKFGARVRKNYRTLVLGKRPVLQTPPVKPNLKSARSPRPTGKTETHEGTLDDFTVLNRRKK
VASNVASAVKRPFNFMANFPCPPSLIIGKDGDLWPAYSLNTTKDSQPPHKAHPIWKWQLGGSAI
PLPPSHKFRKFNS

hide sequence

Ensembl Acc Id:

ENSMUSP00000068520 ⟸ ENSMUST00000066885

Ensembl Acc Id:

ENSMUSP00000088982 ⟸ ENSMUST00000091420

Ensembl Acc Id:

ENSMUSP00000114785 ⟸ ENSMUST00000152908

Ensembl Acc Id:

ENSMUSP00000122112 ⟸ ENSMUST00000142856

Protein Domains

SKI/SNO/DAC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q80YR3-F1-model_v2	AlphaFold	Q80YR3	1-822	view protein structure

Promoters

RGD ID:

6832503

Promoter ID:

MM_KWN:27882

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain, Kidney, Lung

Transcripts:

ENSMUST00000066885, ENSMUST00000091420, NM_028317, OTTMUST00000062882, OTTMUST00000062883

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	17,968,771 - 17,971,422 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1919918	AgrOrtholog
Ensembl Genes	ENSMUSG00000054074	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000091420	ENTREZGENE
	ENSMUST00000091420.6	UniProtKB/TrEMBL
	ENSMUST00000142856.2	UniProtKB/TrEMBL
	ENSMUST00000152908.2	UniProtKB/TrEMBL
Gene3D-CATH	3.10.260.20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	DNA-bd_dom_put_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ElonginBC-PRC2_ViralRestrict	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EPOP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SKI/SNO/DAC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ski_DNA-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:72668	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1919918	ENTREZGENE
NCBI Gene	72668	ENTREZGENE
PANTHER	FLJ44216 PROTEIN-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SKI/DACH DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	EPOP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ski_Sno	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Skida1	PhenoGen
Superfamily-SCOP	SSF46955	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A6PWY1	ENTREZGENE
	A6PWY2	ENTREZGENE
	G3X9M2	ENTREZGENE, UniProtKB/TrEMBL
	Q80YR3	ENTREZGENE
	Q9CSH2	ENTREZGENE
	SKDA1_MOUSE	UniProtKB/Swiss-Prot
	Z4YLL5_MOUSE	UniProtKB/TrEMBL
	Z4YN47_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	A6PWY1	UniProtKB/Swiss-Prot
	A6PWY2	UniProtKB/Swiss-Prot
	Q9CSH2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-05	Skida1	SKI/DACH domain containing 1	5730507N06Rik	RIKEN cDNA 5730507N06 gene	Data merged from RGD:1611894	737654	PROVISIONAL
2012-09-19	Skida1	SKI/DACH domain containing 1	2810030E01Rik	RIKEN cDNA 2810030E01 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Mammalian Phenotype