Rps2-ps5 (ribosomal protein S2, pseudogene 5) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rps2-ps5 (ribosomal protein S2, pseudogene 5) Mus musculus
Analyze
Symbol: Rps2-ps5
Name: ribosomal protein S2, pseudogene 5
RGD ID: 1614690
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG545808; Gm5872
Related Functional Gene: Rps2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391469,396,030 - 69,397,006 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1469,396,120 - 69,396,968 (+)EnsemblGRCm39 Ensembl
GRCm381469,158,581 - 69,159,557 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,158,671 - 69,159,519 (+)EnsemblGRCm38mm10GRCm38
MGSCv371469,776,638 - 69,777,614 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361468,110,160 - 68,112,917 (+)NCBIMGSCv36mm8
Celera787,255,629 - 87,256,477 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15782199   PMID:20003482  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:75
Interacting mature miRNAs:77
Transcripts:ENSMUST00000166546, ENSMUST00000184266
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse

Markers in Region
AW556981  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381244,206,349 - 44,206,466UniSTSGRCm38
MGSCv371245,307,336 - 45,307,453UniSTSGRCm37
Celera1245,576,457 - 45,576,574UniSTS
Cytogenetic Map12B1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12B2-B3UniSTS
Whitehead/MRC_RH12493.31UniSTS
AA673251  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381244,206,925 - 44,207,076UniSTSGRCm38
GRCm38X157,541,412 - 157,541,594UniSTSGRCm38
MGSCv371245,307,912 - 45,308,063UniSTSGRCm37
MGSCv37X153,979,344 - 153,979,526UniSTSGRCm37
Celera1245,577,033 - 45,577,184UniSTS
CeleraX140,793,747 - 140,793,929UniSTS
Cytogenetic Map12B1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic MapXF4UniSTS
Cytogenetic Map12B2-B3UniSTS
Whitehead/MRC_RH12499.32UniSTS
RH124341  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381244,207,303 - 44,207,401UniSTSGRCm38
GRCm38X157,541,087 - 157,541,185UniSTSGRCm38
MGSCv37X153,979,019 - 153,979,117UniSTSGRCm37
MGSCv371245,308,290 - 45,308,388UniSTSGRCm37
CeleraX140,793,422 - 140,793,520UniSTS
Celera1245,577,411 - 45,577,509UniSTS
Cytogenetic Map12B1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic MapXF4UniSTS
Cytogenetic Map12B2-B3UniSTS
RH125757  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381244,205,926 - 44,206,175UniSTSGRCm38
MGSCv371245,306,913 - 45,307,162UniSTSGRCm37
Celera1245,576,034 - 45,576,283UniSTS
Cytogenetic Map12B1UniSTS
Cytogenetic Map12B2-B3UniSTS
Cytogenetic Map14D2UniSTS
Whitehead/MRC_RH12492.04UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_005884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CT025562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000184266
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,396,120 - 69,396,968 (+)Ensembl
GRCm38.p6 Ensembl1469,158,671 - 69,159,519 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098713 Ensembl, ENTREZGENE
MGD MGI:3647821 ENTREZGENE
NCBI Gene 545808 ENTREZGENE
PhenoGen Rps2-ps5 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rps2-ps5  ribosomal protein S2, pseudogene 5  Gm5872  predicted gene 5872  Symbol and/or name change 5135510 APPROVED