4930553J12Rik (RIKEN cDNA 4930553J12 gene) - Rat Genome Database

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Gene: 4930553J12Rik (RIKEN cDNA 4930553J12 gene) Mus musculus
Analyze
Symbol: 4930553J12Rik
Name: RIKEN cDNA 4930553J12 gene
RGD ID: 1614285
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC75351
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391688,595,780 - 88,617,780 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1688,594,396 - 88,617,780 (+)EnsemblGRCm39 Ensembl
GRCm381688,798,892 - 88,820,892 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1688,798,892 - 88,820,892 (+)EnsemblGRCm38mm10GRCm38
MGSCv371688,820,343 - 88,821,135 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361688,708,908 - 88,709,751 (+)NCBIMGSCv36mm8
Celera1689,023,340 - 89,024,132 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1651.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 4930553J12Rik
918 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:137
Interacting mature miRNAs:138
Transcripts:ENSMUST00000023648
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166912761198008968Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166925448298008968Mouse
1300928Etia_methanol induced activation (mouse)Not determined166331390797314016Mouse
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166160864495608764Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166907613298008968Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000232467
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1688,595,780 - 88,617,780 (+)Ensembl
GRCm38.p6 Ensembl1688,798,892 - 88,820,892 (+)Ensembl
Ensembl Acc Id: ENSMUST00000342746
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1688,594,396 - 88,596,095 (+)Ensembl
RefSeq Acc Id: NR_138570
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391688,595,780 - 88,617,780 (+)NCBI
GRCm381688,798,892 - 88,820,892 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000116983 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000232467 ENTREZGENE
MGD MGI:1922601 ENTREZGENE
NCBI Gene 75351 ENTREZGENE
PhenoGen 4930553J12Rik PhenoGen
RNAcentral URS0000A77597 RNACentral