1700071K01Rik (RIKEN cDNA 1700071K01 gene) - Rat Genome Database

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Gene: 1700071K01Rik (RIKEN cDNA 1700071K01 gene) Mus musculus
Analyze
No known orthologs.
Symbol: 1700071K01Rik
Name: RIKEN cDNA 1700071K01 gene
RGD ID: 1614152
MGI Page MGI
Description:
Type: protein-coding (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: prohibitin-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391181,463,328 - 81,464,365 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1181,463,481 - 81,464,299 (-)EnsemblGRCm39 Ensembl
GRCm381181,572,502 - 81,573,539 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1181,572,655 - 81,573,473 (-)EnsemblGRCm38mm10GRCm38
MGSCv371181,386,004 - 81,387,041 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361181,388,697 - 81,389,734 (-)NCBIMGSCv36mm8
Celera1191,198,112 - 91,199,149 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1149.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:18614015   PMID:29222160  


Genomics

Variants

.
Variants in 1700071K01Rik
43 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:152
Interacting mature miRNAs:153
Transcripts:ENSMUST00000117522
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117373754182069425Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000117522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1181,463,481 - 81,464,299 (-)Ensembl
GRCm38.p6 Ensembl1181,572,655 - 81,573,473 (-)Ensembl
RefSeq Acc Id: NM_001033765   ⟹   NP_001028937
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391181,463,328 - 81,464,365 (-)NCBI
GRCm381181,572,502 - 81,573,539 (-)ENTREZGENE
MGSCv371181,386,004 - 81,387,041 (-)RGD
Celera1191,198,112 - 91,199,149 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001028937 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI39180 (Get FASTA)   NCBI Sequence Viewer  
  AAI39182 (Get FASTA)   NCBI Sequence Viewer  
  BAE20797 (Get FASTA)   NCBI Sequence Viewer  
  EDL15653 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001028937   ⟸   NM_001033765
- UniProtKB: Q3V2K0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Band

Promoters
RGD ID:8675816
Promoter ID:EPDNEW_M15938
Type:multiple initiation site
Name:1700071K01Rik_1
Description:Mus musculus RIKEN cDNA 1700071K01 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381181,573,518 - 81,573,578EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080980 Ensembl
Gene3D-CATH 3.30.479.30 UniProtKB/TrEMBL
InterPro Band_7 UniProtKB/TrEMBL
  Band_7/SPFH_dom_sf UniProtKB/TrEMBL
  Prohibitin UniProtKB/TrEMBL
KEGG Report mmu:237880 UniProtKB/TrEMBL
MGD MGI:3588264 ENTREZGENE
NCBI Gene 237880 ENTREZGENE
PANTHER Prohibitin UniProtKB/TrEMBL
  PROHIBITIN UniProtKB/TrEMBL
Pfam Band_7 UniProtKB/TrEMBL
PhenoGen 1700071K01Rik PhenoGen
PRINTS PROHIBITIN UniProtKB/TrEMBL
SMART PHB UniProtKB/TrEMBL
Superfamily-SCOP SSF117892 UniProtKB/TrEMBL
UniProt Q3V2K0 ENTREZGENE, UniProtKB/TrEMBL