Eif1ad15 (eukaryotic translation initiation factor 1A domain containing 15) - Rat Genome Database

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Gene: Eif1ad15 (eukaryotic translation initiation factor 1A domain containing 15) Mus musculus
Analyze
No known orthologs.
Symbol: Eif1ad15
Name: eukaryotic translation initiation factor 1A domain containing 15
RGD ID: 1614092
MGI Page MGI
Description: Predicted to enable translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to be active in cytoplasm. Orthologous to human EIF1AY (eukaryotic translation initiation factor 1A Y-linked).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG266459; eukaryotic translation initiation factor 1A pseudogene; Gm5039; MGC107533
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391288,286,892 - 88,288,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1288,286,892 - 88,290,796 (-)EnsemblGRCm39 Ensembl
GRCm381288,320,122 - 88,321,762 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1288,320,122 - 88,324,026 (-)EnsemblGRCm38mm10GRCm38
MGSCv371289,558,566 - 89,560,206 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361288,833,377 - 88,835,017 (-)NCBIMGSCv36mm8
Celera1289,639,845 - 89,641,487 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1242.51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif1ad15Mousebisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of EIF1AD15 mRNACTDPMID:33221593
Eif1ad15Mouseepoxiconazole affects expressionEXP 6480464epoxiconazole affects the expression of EIF1AD15 mRNACTDPMID:35436446
Eif1ad15Mousetriptonide increases expressionEXP 6480464triptonide results in increased expression of EIF1AD15 mRNACTDPMID:33045310


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif1ad15Mousetranslational initiation involved_inIBAPANTHER:PTN000494875 more ...2290270 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif1ad15Mousecytoplasm is_active_inIBAPANTHER:PTN000494875 more ...2290270 GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif1ad15Mousetranslation initiation factor activity enablesIBAPANTHER:PTN000494875 and SGD:S0000048732290270 GO_CentralGO_REF:0000033


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:21873635  



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Variants in Eif1ad15
40 total Variants

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENSMUST00000177747
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 32 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse

1 to 10 of 32 rows
Eif1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12D3UniSTS
Cytogenetic Map18CUniSTS
Cytogenetic Map12D2UniSTS
cM Map12 UniSTS
cM Map18 UniSTS







Ensembl Acc Id: ENSMUST00000177747   ⟹   ENSMUSP00000136949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1288,287,817 - 88,288,251 (-)Ensembl
GRCm38.p6 Ensembl1288,321,047 - 88,321,481 (-)Ensembl
Ensembl Acc Id: ENSMUST00000218054   ⟹   ENSMUSP00000151971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1288,286,892 - 88,290,796 (-)Ensembl
GRCm38.p6 Ensembl1288,320,122 - 88,324,026 (-)Ensembl
RefSeq Acc Id: NR_003647
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391288,286,892 - 88,288,532 (-)NCBI
GRCm381288,320,122 - 88,321,762 (-)ENTREZGENE
MGSCv371289,558,566 - 89,560,206 (-)RGD
Celera1289,639,845 - 89,641,487 (-)RGD
cM Map12 ENTREZGENE
Sequence:
Protein RefSeqs NP_001423261 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000151971.3
Ensembl Acc Id: ENSMUSP00000151971   ⟸   ENSMUST00000218054
Ensembl Acc Id: ENSMUSP00000136949   ⟸   ENSMUST00000177747

Name Modeler Protein Id AA Range Protein Structure
AF-J3QNT6-F1-model_v2 AlphaFold J3QNT6 1-144 view protein structure



1 to 18 of 18 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000093847 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000218054.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/TrEMBL
  RNA-binding_domain_S1_IF1 UniProtKB/TrEMBL
  TIF_eIF-1A UniProtKB/TrEMBL
  TIF_eIF-1A_CS UniProtKB/TrEMBL
MGD MGI:3648085 ENTREZGENE
NCBI Gene 266459 ENTREZGENE
PANTHER PTHR21668 UniProtKB/TrEMBL
Pfam eIF-1a UniProtKB/TrEMBL
PhenoGen Eif1ad15 PhenoGen
PROSITE IF1A UniProtKB/TrEMBL
  S1_IF1_TYPE UniProtKB/TrEMBL
SMART eIF1a UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/TrEMBL
UniProt J3QNT6_MOUSE UniProtKB/TrEMBL
UniProt Secondary A0A1W2P883 UniProtKB/TrEMBL
1 to 18 of 18 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-10-26 Eif1ad15  eukaryotic translation initiation factor 1A domain containing 15  Gm5039  predicted gene 5039  Symbol and/or name updated 27372883 PROVISIONAL