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Gene: 4930595L18Rik (RIKEN cDNA 4930595L18 gene) Mus musculus

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Symbol:

4930595L18Rik

Name:

RIKEN cDNA 4930595L18 gene

RGD ID:

1613425

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Previously known as:

Gm44197; hypothetical protein LOC78059; uncharacterized protein LOC78059

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	98,508,342 - 98,529,065 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	98,507,727 - 98,605,172 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	98,531,381 - 98,552,104 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	98,535,246 - 98,552,107 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	6	100,394,919 - 100,415,715 (-)	NCBI		Celera
Cytogenetic Map	6	D3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in 4930595L18Rik
926 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10043864	T2dm4sa_m	type 2 diabetes mellitus 4 in SMXA RI mice (mouse)			Not determined		6	83690851	146954059	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71958006	105958152	Mouse
10412119	Stv_m	striatal volumne (mouse)			Not determined		6	60026991	100026967	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71958006	105958152	Mouse
10043923	Bhr7_m	bronchial hyperresponsiveness 7 (mouse)			Not determined		6	98219814	132219938	Mouse
4141940	W6q5_m	weight 6 weeks QTL 5 (mouse)			Not determined			96632912	146535124	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46912919	136400690	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48696934	125336963	Mouse
12792979	Fbmd2_m	femoral bone mineral density 2, females only (mouse)					6	75026989	115026943	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48696934	148351498	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71552042	105552160	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48703490	125333748	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75424566	104480516	Mouse
1301262	Gasa3_m	gastritis type A susceptibility locus 3 (mouse)			Not determined		6	88982366	122982564	Mouse
1301518	Bbaa5_m	B.burgdorferi-associated arthritis 5 (mouse)			Not determined		6	98483798	145881170	Mouse
11353842	Bmiq4_m	body mass index QTL 4 (mouse)					6	92584287	146330736	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45290993	128811995	Mouse
11251720	Ewc4_m	ethanol withdrawal and consumption 4 (mouse)					6	84099474	118099474	Mouse
1301744	Hdlq11_m	HDL QTL 11 (mouse)			Not determined		6	87480321	121480516	Mouse
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	3050001	117476961	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139076998	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75584287	109584431	Mouse
1301687	Mnic2_m	macronutrient intake (mouse)			Not determined		6	86783787	113521563	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70402880	104403016	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52138693	116132228	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70402880	104403016	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76440930	110441074	Mouse
1357555	Tesq2_m	testis weight QTL 2 (mouse)			Not determined		6	96632912	146535124	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75693484	109693678	Mouse
1301244	Ichs_m	immediate cutaneous hypersensitivity QTL (mouse)			Not determined		6	90772571	124772807	Mouse
4142416	Egq11_m	early growth QTL 11 (mouse)			Not determined			96632912	146535124	Mouse
1300704	Cia3_m	collagen induced arthritis QTL 3 (mouse)			Not determined		6	96324286	130324483	Mouse
4141578	Obrq1_m	obesity resistance QTL 1 (mouse)			Not determined			92584287	111981699	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66690851	100691013	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70402880	104403016	Mouse
14696731	Pairq1_m	P. aeruginosa infection resistance QTL 1 (mouse)					6	81476981	102176961	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73476983	134676963	Mouse
4141376	Dbm1_m	diabetes modifier 1 (mouse)			Not determined		6	78606487	121092347	Mouse
1301292	Cfbw2_m	cystic fibrosis body weight 2 (mouse)			Not determined		6	94981612	128981699	Mouse
11040599	Lmr4b_m	leishmaniasis resistance 4b (mouse)					6	96324286	130324483	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_869301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_869302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC158665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK019843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000204069

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	98,512,206 - 98,529,103 (-)	Ensembl
GRCm38.p6 Ensembl	6	98,535,246 - 98,552,107 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000274943

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	98,512,207 - 98,605,172 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000274944

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	98,512,207 - 98,605,172 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000274945

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	98,507,734 - 98,529,084 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000274946

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	98,507,727 - 98,528,984 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000274947

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	98,512,204 - 98,529,103 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000274948

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	98,525,499 - 98,529,085 (-)	Ensembl

RefSeq Acc Id:

XR_869301

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	98,512,198 - 98,529,065 (-)	NCBI
GRCm38	6	98,535,237 - 98,552,104 (-)	NCBI

Sequence:

show sequence

CTCTGGAAGGGTGTATCTAGGACATCAGCCTACCCACAGTTCTGGGCTGCGTCTGTTACTGCCT
TGCTTACCCTGCCCCCCACCCATAACTTCAGAGAAAGGAAAACGGACTGAGCCTCAGCACCCAC
ACACCATGGCTGCCTTGAATCCAGAAACAAGGATGTCACAGCAGTGAAACAGAAAGATCAACAG
CTACGGAGTAAGAGAGTCATCAATACTGGAGTCTTAAAGAGAAAACCAAGAAAGTCTCATGTCA
CCGAGCAGGCTGAAGAGGGCAAGTGAAACCCTGAGGCAGCCAAGATCTCTGCTGGAAATCCAAA
ACATCAATTCTATGTATTCAGGGAACAATCTGCAGAACATTGGGAGATGATGCAGTTAAAATAT
CGTCTTCATAGAGATGAGGTCATGACTATAAACACAATCTTTTAAAGCATGAATGAATAGTCTT
CCTCTTGAAGGGCAGTTGCTTGCAAGGGGATGTTACTGTCTTTGAGAGCTTCAAATTTTTGGAA
ATTCAAGTTGTGTATAGAAGAAAATATCACTCCTTCTTAAACTGAGCAGTCTCT

hide sequence

RefSeq Acc Id:

XR_869302

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	98,508,342 - 98,529,065 (-)	NCBI
GRCm38	6	98,531,381 - 98,552,104 (-)	NCBI

Sequence:

show sequence

CTCTGGAAGGGTGTATCTAGGACATCAGCCTACCCACAGTTCTGGGCTGCGTCTGTTACTGCCT
TGCTTACCCTGCCCCCCACCCATAACTTCAGAGAAAGGAAAACGGACTGAGCCTCAGCACCCAC
ACACCATGGCTGCCTTGAATCCAGAAACAAGGATGTCACAGCAGTGAAACAGAAAGATCAACAG
CTACGGAGTAAGAGCTCCCTTGTAAGGAATGTGGCAAAGAGAGGAACTGATGGCGAGTGATCTC
CATTCTCCTTAAACAACTGGCACAGGAGTCTCAATACCTCAAACACTTAGAAAGC

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000107929	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000274947	ENTREZGENE
MGD	MGI:1925309	ENTREZGENE
NCBI Gene	78059	ENTREZGENE
PhenoGen	4930595L18Rik	PhenoGen
RNAcentral	URS00008C41E1	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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