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Gene: 1700028D13Rik (RIKEN cDNA 1700028D13 gene) Mus musculus

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Symbol:

1700028D13Rik

Name:

RIKEN cDNA 1700028D13 gene

RGD ID:

1613048

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC75569

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	112,354,629 - 112,357,868 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	112,354,588 - 112,357,895 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	112,206,763 - 112,210,002 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	112,206,763 - 112,210,004 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	5	109,326,510 - 109,329,749 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
1700028D13Rik	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
1700028D13Rik	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
1700028D13Rik	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:14610273	PMID:16141072	PMID:16141073	PMID:24316575

Variants in 1700028D13Rik
198 total Variants

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10045978	Tir10_m	trypanosome infection response 10 (mouse)			Not determined		5	98019649	114021986	Mouse
1301399	Cpfd3_m	cerebellum pattern fissures (mouse)			Not determined		5	87386871	121387065	Mouse
25314310	Syncl4_m	synaptonemal complex length 4 (mouse)					5	103047866	115538059	Mouse
1301524	Lmb2_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		5	37581488	112465722	Mouse
25314315	Mlh1fc4_m	MLH1 foci count 4 (mouse)					5	74460661	132528839	Mouse
1357725	Eae39_m	experimental allergic encephalomyelitis 39 (mouse)			Not determined		5	89418876	118864028	Mouse
14746986	Manh58_m	mandible shape 58 (mouse)					5	102446283	136446283	Mouse
25314317	Sccor3_m	synaptonemal complex length to mean MLH1 count ratio 3 (mouse)					5	104347866	114738061	Mouse
1300993	Hycdc_m	hypercapnic duty cycle (mouse)			Not determined		5	90561006	124561151	Mouse
1301126	Bwem1_m	body weight day 30 males 1 (mouse)			Not determined		5	87386871	121387065	Mouse
1300659	Pcd8ts1_m	p-glycoprotein positive CD8 T cell subset 1 (mouse)			Not determined		5	97021753	131021986	Mouse
1301042	Elmaz1_m	elevated maze behavior 1 (mouse)			Not determined		5	98019649	116876624	Mouse
1300913	Bwefm_m	body weight females and males day 10 (mouse)			Not determined		5	109439348	143439459	Mouse
10402486	Dipa1_m	drug induced psychomotor activation 1 (mouse)			Not determined		5	95465549	129465722	Mouse
1357886	Diht_m	dopamine-induced hypothermia (mouse)			Not determined		5	104498738	115101540	Mouse
10043958	Chldq12_m	cholesterol and HDL QTL 12 (mouse)			Not determined		5	87386871	121387065	Mouse
26884395	Humsd2_m	humerus midshaft diameter 2, 10 week (mouse)					5	70057343	132528839	Mouse
10412202	Bbaa26_m	B.burgdorferi-associated arthritis 26 (mouse)			Not determined		5	104583688	138555455	Mouse
1301543	Hypch_m	hypercholesterolemia (mouse)			Not determined		5	109238624	139118905	Mouse
12904945	Tammq2_m	tibialis anterior muscle mass QTL 2 (mouse)					5	100665965	134665965	Mouse
4142473	Chlq11_m	circulating hormone level QTL 11 (mouse)			Not determined		5	107906299	141906412	Mouse
1301419	Cypr3_m	cytokine production 3 (mouse)			Not determined		5	81019649	115019803	Mouse
11341716	Rvfs3_m	Rift Valley fever susceptibility 3 (mouse)					5	26441234	138455402	Mouse
12904959	Smmq1_m	soleus muscle mass QTL 1 (mouse)					5	100665965	134665965	Mouse
10412197	Bbaa25_m	B.burgdorferi-associated arthritis 25 (mouse)			Not determined		5	109167240	143167381	Mouse
13506928	Recrq8_m	recombination rate in male meiosis QTL 8 (mouse)					5	74460661	132528839	Mouse
27226719	Tibw6_m	tibia width 6, proximal, 16 week (mouse)					5	72857343	139985755	Mouse
10401246	Bglu13_m	blood glucose level 13 (mouse)			Not determined		5	79539640	113539786	Mouse
1301457	Cfsw2_m	cystic fibrosis survival to weaning 2 (mouse)			Not determined		5	90561006	124561151	Mouse
10401245	Bglu18_m	blood glucose level 18 (mouse)			Not determined		5	82838468	116838597	Mouse
1301974	Chab7_m	cholesterol absorption 7 (mouse)			Not determined		5	95233214	129233330	Mouse
11528550	Sluc33_m	susceptibility to lung cancer 33 (mouse)					5	104386871	120711986	Mouse
4142064	Tmc1m4_m	Tmc1 modifier 4 (mouse)			Not determined		5	54500177	127001072	Mouse
10412239	Alpq7_m	alcohol preference QTL 7 (mouse)			Not determined		5	104705939	138705939	Mouse
1300801	Drb2_m	dopamine receptor binding 2 (mouse)			Not determined		5	87386871	121387065	Mouse
9587780	Afw16_m	abdominal fat weight QTL 16 (mouse)			Not determined		5	92830166	126830285	Mouse
1357644	Egrd1_m	early growth rate, direct effect 1 (mouse)			Not determined		5	95434580	129434786	Mouse
1357901	Mdmsc2_m	modifier of muscularity 2 (mouse)			Not determined		5	107561006	112434786	Mouse
12859290	Criq2_m	Citrobacter rodentium infection QTL 2 (mouse)					5	101332579	135332579	Mouse
1300940	Actd3_m	activity-distance traveled 3 (mouse)			Not determined		5	96320385	130320533	Mouse
10755524	Mono1_m	monocyte differential 1 (mouse)					5	80849259	114849259	Mouse
1301362	Prnr1_m	prion resistance 1 (mouse)			Not determined		5	89418876	146787935	Mouse
1558774	Lith17_m	lithogenic gene 17 (mouse)			Not determined		5	95465549	129465722	Mouse
1357431	Cia27_m	collagen induced arthritis 27 (mouse)			Not determined		5	75315348	120018629	Mouse
1301877	Bbaa3_m	B.burgdorferi-associated arthritis 3 (mouse)			Not determined		5	99455285	112465722	Mouse
1301624	Aevm2_m	autoimmune extremity vasculitis in MRL mice 2 (mouse)			Not determined		5	101863832	135864028	Mouse
10043890	Trigq4_m	triglyceride QTL 4 (mouse)			Not determined		5	107906299	141906412	Mouse
4141652	Mrdq2_m	modifier of retinal degeneration QTL 2 (mouse)			Not determined			110253106	118093673	Mouse
4141139	Hmtb4_m	hemostasis and thrombosis rebleeding time 4 (mouse)			Not determined			108762509	126882944	Mouse
11532736	Sluc33b_m	susceptibility to lung cancer 33b (mouse)					5	102945037	136945196	Mouse
4141519	Hmtb5_m	hemostasis and thrombosis bleeding time 5 (mouse)			Not determined			99949422	126882944	Mouse
1301858	Smdq1_m	segregation of mitochondrial DNA QTL 1 (mouse)			Not determined		5	97021753	131021986	Mouse
11049562	Lmr24f_m	leishmaniasis resistance 24f (mouse)					5	90320962	124321041	Mouse
13464251	Ahl21_m	age related hearing loss, early onset 21 (mouse)					5	109167240	143167381	Mouse
13464244	Ahl19_m	age related hearing loss, early onset 19 (mouse)					5	95465549	129465722	Mouse
1300968	Skts4_m	skin tumor susceptibility 4 (mouse)			Not determined		5	89418876	124238239	Mouse
13464241	Ahl18_m	age related hearing loss, early onset 18 (mouse)					5	87386871	121387065	Mouse
13464243	Ahl20_m	age related hearing loss, early onset 20 (mouse)					5	107906299	141906412	Mouse
13464242	Ahl17_m	age related hearing loss, early onset 17 (mouse)					5	82838468	116838597	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NR_045377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_045378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK006451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000186834

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,588 - 112,357,895 (+)	Ensembl
GRCm38.p6 Ensembl	5	112,206,763 - 112,210,002 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000187272

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,598 - 112,357,895 (+)	Ensembl
GRCm38.p6 Ensembl	5	112,206,806 - 112,210,004 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317112

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,601 - 112,357,895 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317113

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,619 - 112,357,890 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317114

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,625 - 112,357,895 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317115

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,614 - 112,357,871 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317116

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,616 - 112,357,871 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317117

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,618 - 112,357,871 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317118

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,621 - 112,357,871 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317119

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,618 - 112,357,868 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317120

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,621 - 112,357,868 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317121

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,629 - 112,357,868 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317122

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,631 - 112,357,861 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317123

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,649 - 112,357,873 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317124

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,354,663 - 112,357,868 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317125

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,355,032 - 112,357,866 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000317126

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	112,357,209 - 112,357,866 (+)	Ensembl

RefSeq Acc Id:

NR_045377

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	112,354,629 - 112,357,868 (+)	NCBI
GRCm38	5	112,206,763 - 112,210,002 (+)	ENTREZGENE
Celera	5	109,326,510 - 109,329,749 (+)	ENTREZGENE
cM Map	5		ENTREZGENE

Sequence:

show sequence

AAGGAGGCGGAGCCTTGCCCGCTCCCCACACTGTGTGAGTCCCAGGGACAAGTTTCTGGAGGGGAGTATTAGTGACTTTTTTTCACTGCTGTAACCGAATACCTCAAAGGGATGAACTCAGGGGCAGG
GGCATTTCTTTGGACTCTGGGCTTGCACAGAAGTTCCCTACCTGAGAGAGGCTCAGAATGAAACTCCTTGGGACTCTAAAGCTCCATGTAAAAAGTCAGGCGCTCAAGAGACTGACGGAGGACATCAT
TAGGTCAAGGTCAGCCTGGACTGTATAGCAAAACCCTGTCTGCCAAGAGATGAAGAGATGGAGAGATGGCTCAGTGGTTAAGGGCACTGACTGCTCTTTCTGAGGACCCAGTGCAGCCTCAGAGTCAA
TGAGAAGACAGACTCTGCACTTGGCGTGCATTCACCCCCAAGTGTATGGAAGCCATCTTGAAGCAGCTTCTCAATTCTCCTGCCATGTCTCTCTGTTCAGGATGTTCCTGCCACTGAACCCGAGCCTG
GCATCCAGCAAGCGCTAGCCAAGAGCTTAGCAGTGACCACTTGTCTACTCATCGGGGGACGGCCATCAGCCTGGAGGTGAACCAGGGAGAGTCTTGACTATAGGCACGGCCCCAGCATCAGTGGGATC
TTGGGGGAGACTTTGACCATCAGCAGAGGAGGTTTGGGGGGACAATGTTATTAAAATAAAATGACCCTTGCCAAGA

hide sequence

RefSeq Acc Id:

NR_045378

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	112,354,629 - 112,357,868 (+)	NCBI
GRCm38	5	112,206,763 - 112,210,002 (+)	ENTREZGENE
Celera	5	109,326,510 - 109,329,749 (+)	ENTREZGENE
cM Map	5		ENTREZGENE

Sequence:

show sequence

AAGGAGGCGGAGCCTTGCCCGCTCCCCACACTGTGTGAGTCCCAGGGACAAGTTTCTGGAGGGGAGTATTAGTGACTTTTTTTCACTGCTGTAACCGAATACCTCAAAGGGATGAACTCAGGGGCAGG
GGCATTTCTTTGGACTCTGGGCTTGCACAGAAGTTCCCTACCTGAGAGAGGCTCAGAATGAAACTCCTTGGGACTCTAAAGTGCAGCCTCAGAGTCAATGAGAAGACAGACTCTGCACTTGGCGTGCA
TTCACCCCCAAGTGTATGGAAGCCATCTTGAAGCAGCTTCTCAATTCTCCTGCCATGTCTCTCTGTTCAGGATGTTCCTGCCACTGAACCCGAGCCTGGCATCCAGCAAGCGCTAGCCAAGAGCTTAG
CAGTGACCACTTGTCTACTCATCGGGGGACGGCCATCAGCCTGGAGGTGAACCAGGGAGAGTCTTGACTATAGGCACGGCCCCAGCATCAGTGGGATCTTGGGGGAGACTTTGACCATCAGCAGAGGA
GGTTTGGGGGGACAATGTTATTAAAATAAAATGACCCTTGCCAAGA

hide sequence

RGD ID:

6887582

Promoter ID:

EPDNEW_M7241

Type:

initiation region

Name:

1700028D13Rik_1

Description:

Mus musculus RIKEN cDNA 1700028D13 gene , transcript variant2, long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	112,206,763 - 112,206,823	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000101683	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000186834	ENTREZGENE
	ENSMUST00000187272	ENTREZGENE
MGD	MGI:1922819	ENTREZGENE
NCBI Gene	75569	ENTREZGENE
PhenoGen	1700028D13Rik	PhenoGen
RNAcentral	URS000075C9D8	RNACentral
	URS000075D526	RNACentral
	URS0000771F4D	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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