Advanced Search (OLGA)

Gene: A630023A22Rik (RIKEN cDNA A630023A22 gene) Mus musculus

Subscribe to Updates

Analyze

Symbol:

A630023A22Rik

Name:

RIKEN cDNA A630023A22 gene

RGD ID:

1612459

MGI Page

MGI

Description:

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AI461879; hypothetical protein LOC105518; uncharacterized protein LOC105518

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	33,773,083 - 33,824,711 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	33,773,083 - 33,824,711 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	34,051,126 - 34,102,754 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	34,051,126 - 34,102,754 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	34,864,312 - 34,915,940 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	14	30,313,814 - 30,365,621 (-)	NCBI		Celera
Cytogenetic Map	14	B	NCBI
cM Map	14	20.8	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
A630023A22Rik	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
A630023A22Rik	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
A630023A22Rik	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12040188	PMID:12466851	PMID:14610273	PMID:16141072	PMID:16141073

Variants in A630023A22Rik
1755 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	142
Count of miRNA genes:	138
Interacting mature miRNAs:	140
Transcripts:	ENSMUST00000178958
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20887473	121269804	Mouse
27226748	Femd8_m	femur midshaft diameter 8, 10 week (mouse)					14	13769273	46737457	Mouse
1357527	Epfpq1_m	epididymal fat percentage QTL 1 (mouse)			Not determined		14	21062450	71885801	Mouse
27226744	Metcl6_m	metatarsal-calcaneal length 6, 5 week (mouse)					14	30321957	52937457	Mouse
27226775	Tibl7_m	tibia length 7, 5 week (mouse)					14	30321957	48837457	Mouse
27226774	Tibl15_m	tibia length 15, 10 week (mouse)					14	30321957	87937436	Mouse
4142485	Modor2_m	modifier of ocular retardation 2 (mouse)			Not determined		14	24926248	58179769	Mouse
27226737	Metcl12_m	metatarsal-calcaneal length 12, 10 week (mouse)					14	33221957	59437449	Mouse
1301372	Sluc13_m	susceptibility to lung cancer 13 (mouse)			Not determined		14	18827604	52827726	Mouse
14696688	Rfq2_m	rearing frequency QTL 2, males (mouse)					14	33721957	35721957	Mouse
4141550	Dbm3_m	diabetes modifier 3 (mouse)			Not determined			5143473	39143596	Mouse
1300544	Hypn_m	hyperinsulinemia (mouse)			Not determined		14	15160616	49160765	Mouse
1301991	Wta3_m	weight adult 3 (mouse)			Not determined		14	3887473	37887650	Mouse
1300998	Cia17_m	collagen induced arthritis 17 (mouse)			Not determined		14	30335250	64335381	Mouse
4141864	Mrdq4_m	modifier of retinal degeneration QTL 4 (mouse)			Not determined			9923245	48765082	Mouse
10043886	Cia49_m	collagen induced arthritis QTL 49 (mouse)			Not determined		14	29996994	63997133	Mouse
1300779	Dyscalc4_m	dystrophic cardiac calcinosis 4 (mouse)			Not determined		14	12212871	46213007	Mouse
14746973	Manh76_m	mandible shape 76 (mouse)					14	22287217	56287217	Mouse
1300909	Ath13_m	atherosclerosis 13 (mouse)			Not determined		14	30335250	64335381	Mouse
27226752	Femd4_m	femur midshaft diameter 4, 5 week (mouse)					14	13769273	47237457	Mouse
13506929	Recrq10_m	recombination rate in male meiosis QTL 10 (mouse)					14	27921957	61137449	Mouse

AI461879

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	14	34,051,326 - 34,051,447	UniSTS	GRCm38
MGSCv37	14	34,864,512 - 34,864,633	UniSTS	GRCm37
Celera	14	30,314,013 - 30,314,134	UniSTS
Whitehead/MRC_RH	14	312.66	UniSTS

AI466995

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	14	34,100,354 - 34,100,494	UniSTS	GRCm38
MGSCv37	14	34,913,540 - 34,913,680	UniSTS	GRCm37
Celera	14	40,001,526 - 40,001,666	UniSTS
Celera	14	30,363,238 - 30,363,378	UniSTS
Cytogenetic Map	14	B	UniSTS
cM Map	14	13.0	UniSTS
Whitehead/MRC_RH	14	310.37	UniSTS
Whitehead/MRC_RH	14	305.43	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001251843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC164099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK041587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW989347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000178958 ⟹ ENSMUSP00000137109

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	33,773,083 - 33,824,650 (-)	Ensembl
GRCm38.p6 Ensembl	14	34,051,126 - 34,102,693 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000215823

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	33,773,219 - 33,824,711 (-)	Ensembl
GRCm38.p6 Ensembl	14	34,051,262 - 34,102,754 (-)	Ensembl

RefSeq Acc Id:

NM_001251843 ⟹ NP_001238772

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	33,773,083 - 33,824,711 (-)	NCBI
GRCm38	14	34,051,126 - 34,102,754 (-)	ENTREZGENE
Celera	14	30,313,814 - 30,365,621 (-)	ENTREZGENE
cM Map	14		ENTREZGENE

Sequence:

show sequence

CCAAGGGAGTCACACACCTTGATAGGAGACCAGAGCCTCTGGGATGGGTTAGCTCTCTGAGAAAGCTAAGGAGCTGGAGCACCAGGACGAGCCTTTCTCGGTACAGAGTCCTGGCTAGACCGTAAGCA
CAGAGCACCCGTGGTCACAGAGAAACAAGGTGTCCATTACCACATGGTGTCCCCCTACTCTGTTAGTGCACCAGCCTGGGTCTATGCTCTCTCTATCAGAGGGATACTCCCTTGAAGCCCAGAGGAGA
CTACAGTCAGAAGAAGCCATACTTTGTGAATTTCTTCACCAAACCCTCTGCAAATGAATAAATGTGGATCCAGTTGTCCGCCACACTGCCTGATCTGAAGACAAAGGAGATATATGTCAAGCCAGGAC
CATGGTATCGGAGGCTCCCACCTTTAAAAGTGGGAGGAAGCAACAGGAGCAGGAGCAGAAAAAGTGCCGAACAAGGCATGGAGGGACTGTGGCTCATCATGTTGACTGTCCCTGGGACTTTGCTAGCT
CCTGGGATGCTGTGGAAGGTCACACGGAATCTTTCTCTACCACCTCTGCCTGAACTTAGGGCCTCTTCACAGCATCAGTGGGCATGGACTTCCTTGGCGGAGGCCCAGAGCTTGAGGAGACAGTGTCT
GCAGTGCGGAGCTTCAGACCGTGGGGCCCTTTATGACATCACACCACCAGGCATGGTGTCATTTATGCTGTTCTCTGGCCGGAGCTTCACCAGGTTGTCCAGTTTCAGAGAGGAGTGTGGGTGGGCTC
CCCAGTGCCTTCACCCTTCTTCATCAAAGAACCTGGAATGGCAGAGGGGGAGGCGGTGTGGAGAGATGGTGCCACACAACTGCATTCAAAAGGAATCCAGGCCACTCAGACACTCCTACATACACCAG
CCACACCAGATGCTGACCTGAATTACCATCTTTCCAAAGTCCCAAAGAAGTAGGACCGCCTGATCTTTGACAGGAGTCTTCAGAACTGTGAGCCAAACCCTGGACCAAGCAGACGATGAAGCCCCTCT
TCTATTGAGTGCTATTGGCAGCTGTGGGCTTCTAGGGAGGCATGCTTTCATGAGGAGAGCTGCTCACACTCAGGGGGCTGGCCCTACACCCATTCACATGCCTGCAGCTCTAATTAGACTCAATGGGT
TATAAAGGGAAAAAAATCTTAATTACGGTTTGAAAATTTTATATTTAGTTTTAGTAATCAATTTTTTAAAAAAAACTGTGATTCAAATCACTATAATTATGTAAGTTATGTTTTACTTTTATGTATAT
TACTTGTTTACAGCAGAACAAATATGTTCTTAAAAAAATAAACCCATCTTTTAAAAAA

hide sequence


Protein RefSeqs	NP_001238772	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL24864	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000137109
	ENSMUSP00000137109.2

RefSeq Acc Id:	NP_001238772 ⟸ NM_001251843
- UniProtKB:	J3QP60 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWIQLSATLPDLKTKEIYVKPGPWYRRLPPLKVGGSNRSRSRKSAEQGMEGLWLIMLTVPGTLLAPGMLWKVTRNLSLPPLPELRASSQHQWAWTSLAEAQSLRRQCLQCGASDRGALYDITPPGMVS FMLFSGRSFTRLSSFREECGWAPQCLHPSSSKNLEWQRGRRCGEMVPHNCIQKESRPLRHSYIHQPHQMLT hide sequence

Ensembl Acc Id:

ENSMUSP00000137109 ⟸ ENSMUST00000178958

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-J3QP60-F1-model_v2	AlphaFold	J3QP60	1-199	view protein structure

RGD ID:

8681918

Promoter ID:

EPDNEW_M18990

Type:

initiation region

Name:

A630023A22Rik_1

Description:

Mus musculus RIKEN cDNA A630023A22 gene , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	14	34,102,704 - 34,102,764	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000095493	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000178958	ENTREZGENE
	ENSMUST00000178958.3	UniProtKB/TrEMBL
KEGG Report	mmu:105518	UniProtKB/TrEMBL
MGD	MGI:2145657	ENTREZGENE
NCBI Gene	105518	ENTREZGENE
PhenoGen	A630023A22Rik	PhenoGen
UniProt	J3QP60	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message