AU020206 (expressed sequence AU020206) - Rat Genome Database

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Gene: AU020206 (expressed sequence AU020206) Mus musculus
Analyze
Symbol: AU020206
Name: expressed sequence AU020206
RGD ID: 1612061
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC101757; uncharacterized protein LOC101757; uncharacterized protein LOC108167440
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39775,418,786 - 75,431,868 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl775,398,815 - 75,440,938 (-)EnsemblGRCm39 Ensembl
GRCm38775,769,038 - 75,782,120 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl775,769,038 - 75,782,099 (-)EnsemblGRCm38mm10GRCm38
MGSCv37782,913,925 - 82,926,985 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map7D1NCBI
cM Map743.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12904583   PMID:14610273   PMID:16141072   PMID:16141073  
PMID:17967808   PMID:18799693   PMID:21267068   PMID:24316575   PMID:27899360   PMID:38657723  


Genomics

Variants

.
Variants in AU020206
736 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:115
Interacting mature miRNAs:120
Transcripts:ENSMUST00000181224
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
4142212Png1_mPostnatal growth 1 (mouse)Not determined7432612192394346Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
4142319Powg_mpost-ovarectomy weight gain (mouse)Not determined7285710592582163Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
13506750Tbthq2_mtrabecular bone thickness QTL 2 (mouse)76565974877549748Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
12801463Rta1_mretinal aging 1 (mouse)76716802789089989Mouse
13513914Heal52_mwound healing/ regeneration 52 (mouse)77355037278591455Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse

Markers in Region
RH136378  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38775,769,116 - 75,769,312UniSTSGRCm38
MGSCv37782,914,002 - 82,914,198UniSTSGRCm37
Celera773,220,481 - 73,220,677UniSTS
UniSTS:235692  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38775,769,751 - 75,770,010UniSTSGRCm38
MGSCv37782,914,637 - 82,914,896UniSTSGRCm37
Celera773,221,116 - 73,221,375UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000181224
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl775,418,786 - 75,431,869 (-)Ensembl
GRCm38.p6 Ensembl775,769,762 - 75,782,099 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206358
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl775,418,786 - 75,421,794 (-)Ensembl
GRCm38.p6 Ensembl775,769,038 - 75,772,046 (-)Ensembl
Ensembl Acc Id: ENSMUST00000286284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl775,398,815 - 75,431,847 (-)Ensembl
Ensembl Acc Id: ENSMUST00000286285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl775,406,632 - 75,431,866 (-)Ensembl
Ensembl Acc Id: ENSMUST00000286286
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl775,418,786 - 75,440,938 (-)Ensembl
Ensembl Acc Id: ENSMUST00000286287
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl775,418,789 - 75,431,868 (-)Ensembl
Ensembl Acc Id: ENSMUST00000286288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl775,418,786 - 75,431,591 (-)Ensembl
Ensembl Acc Id: ENSMUST00000286289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl775,427,025 - 75,431,869 (-)Ensembl
Ensembl Acc Id: ENSMUST00000286290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl775,427,521 - 75,431,869 (-)Ensembl
Ensembl Acc Id: ENSMUST00000286291
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl775,427,022 - 75,430,698 (-)Ensembl
Ensembl Acc Id: ENSMUST00000286292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl775,428,404 - 75,431,878 (-)Ensembl
RefSeq Acc Id: NR_165329
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39775,418,786 - 75,431,868 (-)NCBI
Sequence:
Promoters
RGD ID:15093287
Promoter ID:EPDNEWNC_M1195
Type:multiple initiation site
Name:AU020206_1
Description:expressed sequence AU020206 [Source:MGISymbol;Acc:MGI:2142134]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38775,782,107 - 75,782,167EPDNEWNC
RGD ID:8664463
Promoter ID:EPDNEW_M10262
Type:initiation region
Name:KY467450_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38775,782,107 - 75,782,167EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097415 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181224 ENTREZGENE
MGD MGI:2142134 ENTREZGENE
NCBI Gene AU020206 ENTREZGENE
PhenoGen AU020206 PhenoGen
RNAcentral URS00009C6032 RNACentral
  URS0001981378 RNACentral
  URS00025E37CB RNACentral