1700087M22Rik (RIKEN cDNA 1700087M22 gene) - Rat Genome Database

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Gene: 1700087M22Rik (RIKEN cDNA 1700087M22 gene) Mus musculus
Analyze
Symbol: 1700087M22Rik
Name: RIKEN cDNA 1700087M22 gene
RGD ID: 1611687
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC78467; uncharacterized protein LOC78467
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,492,636 - 30,499,981 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,454,327 - 30,500,003 (-)EnsemblGRCm39 Ensembl
GRCm381430,770,679 - 30,778,024 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1430,770,681 - 30,778,004 (-)EnsemblGRCm38mm10GRCm38
Celera1427,029,823 - 27,037,113 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700087M22RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700087M22RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700087M22RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  



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Variants in 1700087M22Rik
234 total Variants

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:76
Interacting mature miRNAs:78
Transcripts:ENSMUST00000128554
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse

1 to 10 of 19 rows





RefSeq Transcripts XR_874489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000227408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,454,329 - 30,499,986 (-)Ensembl
GRCm38.p6 Ensembl1430,770,681 - 30,778,004 (-)Ensembl
Ensembl Acc Id: ENSMUST00000278529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,454,327 - 30,499,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000278530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,456,198 - 30,499,961 (-)Ensembl
Ensembl Acc Id: ENSMUST00000278531
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,458,395 - 30,499,961 (-)Ensembl
Ensembl Acc Id: ENSMUST00000278532
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,470,119 - 30,499,965 (-)Ensembl
Ensembl Acc Id: ENSMUST00000278533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,470,119 - 30,499,939 (-)Ensembl
Ensembl Acc Id: ENSMUST00000278534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,470,706 - 30,499,965 (-)Ensembl
Ensembl Acc Id: ENSMUST00000278535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,470,706 - 30,499,949 (-)Ensembl
Ensembl Acc Id: ENSMUST00000278536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,486,402 - 30,500,003 (-)Ensembl
Ensembl Acc Id: ENSMUST00000278537
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,486,402 - 30,499,961 (-)Ensembl
Ensembl Acc Id: ENSMUST00000278538
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,470,118 - 30,471,560 (-)Ensembl
Ensembl Acc Id: ENSMUST00000278539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,470,119 - 30,471,554 (-)Ensembl
Ensembl Acc Id: ENSMUST00000278540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,470,706 - 30,471,544 (-)Ensembl
RefSeq Acc Id: XR_874489
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391430,492,636 - 30,499,981 (-)NCBI
GRCm381430,770,679 - 30,778,024 (-)NCBI
Sequence:
RGD ID:8681780
Promoter ID:EPDNEW_M18921
Type:multiple initiation site
Name:AK018913_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381430,778,004 - 30,778,064EPDNEW
RGD ID:15094408
Promoter ID:EPDNEWNC_M2321
Type:single initiation site
Name:1700087M22Rik_1
Description:RIKEN cDNA 1700087M22 gene [Source:MGISymbol;Acc:MGI:1925717]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381430,778,004 - 30,778,064EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000115723 Ensembl
MGD MGI:1925717 ENTREZGENE
NCBI Gene 78467 ENTREZGENE
PhenoGen 1700087M22Rik PhenoGen
RNAcentral URS00007888FB RNACentral