1700087M22Rik (RIKEN cDNA 1700087M22 gene) - Rat Genome Database

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Gene: 1700087M22Rik (RIKEN cDNA 1700087M22 gene) Mus musculus
Analyze
Symbol: 1700087M22Rik
Name: RIKEN cDNA 1700087M22 gene
RGD ID: 1611687
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC78467; uncharacterized protein LOC78467
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,492,636 - 30,499,981 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,492,638 - 30,499,961 (-)EnsemblGRCm39 Ensembl
GRCm381430,770,679 - 30,778,024 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1430,770,681 - 30,778,004 (-)EnsemblGRCm38mm10GRCm38
Celera1427,029,823 - 27,037,113 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 1700087M22Rik
234 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:76
Interacting mature miRNAs:78
Transcripts:ENSMUST00000128554
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000227408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1430,492,638 - 30,499,961 (-)Ensembl
GRCm38.p6 Ensembl1430,770,681 - 30,778,004 (-)Ensembl
RefSeq Acc Id: XR_874489
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391430,492,636 - 30,499,981 (-)NCBI
GRCm381430,770,679 - 30,778,024 (-)NCBI
Sequence:
Promoters
RGD ID:8681780
Promoter ID:EPDNEW_M18921
Type:multiple initiation site
Name:AK018913_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381430,778,004 - 30,778,064EPDNEW
RGD ID:15094408
Promoter ID:EPDNEWNC_M2321
Type:single initiation site
Name:1700087M22Rik_1
Description:RIKEN cDNA 1700087M22 gene [Source:MGISymbol;Acc:MGI:1925717]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381430,778,004 - 30,778,064EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000115723 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000227408 ENTREZGENE
MGD MGI:1925717 ENTREZGENE
NCBI Gene 78467 ENTREZGENE
PhenoGen 1700087M22Rik PhenoGen