1700044C05Rik (RIKEN cDNA 1700044C05 gene)

Gene: 1700044C05Rik (RIKEN cDNA 1700044C05 gene) Mus musculus

Analyze

Symbol:

1700044C05Rik

Name:

RIKEN cDNA 1700044C05 gene

RGD ID:

1611377

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

PREDICTED

Previously known as:

hypothetical protein LOC73306

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	118,603,290 - 118,635,577 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	118,603,290 - 118,635,582 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	118,365,878 - 118,398,165 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	118,365,878 - 118,398,170 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	14	116,923,277 - 116,955,462 (+)	NCBI		Celera
Cytogenetic Map	14	E4	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:24316575

Genomics

Variants

Variants in 1700044C05Rik
1405 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20887473	121269804	Mouse
4142508	Tgq25_m	triglyceride QTL 25 (mouse)			Not determined			85134068	119134068	Mouse
12792981	Fbmd5_m	femoral bone mineral density 5, females only (mouse)					14	99838217	125033054	Mouse
10755523	Hgb2_m	hemoglobin 2 (mouse)					14	105884654	125139656	Mouse
12903991	Opfaq4_m	open field activity QTL 4 (mouse)					14	111211209	118699845	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_045624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC108806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK006694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT025694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000186060

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	118,603,290 - 118,635,582 (+)	Ensembl
GRCm38.p6 Ensembl	14	118,365,878 - 118,398,170 (+)	Ensembl

RefSeq Acc Id:

NR_045624

RefSeq Status:

PREDICTED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	118,603,290 - 118,635,577 (+)	NCBI
GRCm38	14	118,365,878 - 118,398,165 (+)	ENTREZGENE
Celera	14	116,923,277 - 116,955,462 (+)	ENTREZGENE
cM Map	14		ENTREZGENE

Sequence:

show sequence

AGACCTGTTGCCAAGGCAACAGGCACCATGTTCCCAACATTCAATTGGCTCACCTCCCTGCGTA
GACATTCTCCATATAAATAAGGAGAATGCCCCTCCCTCTCTCTCTCCCCCTCTTCTCTTTCTGT
CACCACCTTCTCTCTCTTTCCCCAAAAAACCCTCTTCCATGTGGAACTGCCTTGGCCTAGTGTG
CTATTGAGACTCGACCCGCCATTCTAACACATCAAATATGACATGACCAAGGCTGCACGCTAGC
CTGGGGTATGGAAACCACATGCAAGGAGGCAAGACTCACAAAGGCGGTGTGTGTTAAACTGCCC
TGTGGGTTCCAAGATGGCGGCAACAAGCCAAGTGCATCTAACCTGTACTTGACATGATTTCTCT
GAGTAACCTTGGTTGTCCTGTAGATGAGGCTGGCCTCAAACTCAGTAAAGACAAGCTCCATGGT
CAGCGAAGGTGGGCAATGCAAAAAGAACCCAGTGAGCTCAGCTAATGTGACAAGTCAGCCAGCC
AGCTTGCTCGCGGATCTGTCTCTGCCATCTGAGCACTGGATTACAGGCTTGCTTCCTGTACAGG
GATCACCAGAATTAATTTCAACCATACCTACATATTTCTTGGCGATGGGCAAAGAAAAACATTT
GGAAGAATTCGTATGAATCCCCATATCTGAAAGGCCCCTGGACATGTTTCTTGGAGGGGGGGGT
GGCTTTTATCAAATTTCTTTATCAAACTTTTAAGTCTTTAAGCTATGATTCTCAAAGACTATAT
GGCTGTGTTACATTCCAAAGCATCAAAAATTCTACAAGTCCTTATGTCAAATATCTTAGATGTA
ACTTCTTGGTGCCTTATATATAAATCCAACATTCTTAAATAAACCATCTTCACAGCTACCC

hide sequence

Promoters

RGD ID:

8683202

Promoter ID:

EPDNEW_M19632

Type:

multiple initiation site

Name:

1700044C05Rik_1

Description:

Mus musculus RIKEN cDNA 1700044C05 gene , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	14	118,365,890 - 118,365,950	EPDNEW

RGD ID:

15094512

Promoter ID:

EPDNEWNC_M2415

Type:

initiation region

Name:

1700044C05Rik_1

Description:

RIKEN cDNA 1700044C05 gene [Source:MGISymbol;Acc:MGI:1920556]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	14	118,365,890 - 118,365,950	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000099911	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000186060	ENTREZGENE
MGD	MGI:1920556	ENTREZGENE
NCBI Gene	73306	ENTREZGENE
PhenoGen	1700044C05Rik	PhenoGen
RNAcentral	URS0000759FAD	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message