2310015A10Rik (RIKEN cDNA 2310015A10 gene) - Rat Genome Database

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Gene: 2310015A10Rik (RIKEN cDNA 2310015A10 gene) Mus musculus
Analyze
Symbol: 2310015A10Rik
Name: RIKEN cDNA 2310015A10 gene
RGD ID: 1610887
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 5330419I17Rik; RIKEN cDNA 5330419I17 gene
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391280,167,320 - 80,179,618 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1280,160,337 - 80,186,153 (-)EnsemblGRCm39 Ensembl
GRCm381280,120,546 - 80,132,844 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1280,120,546 - 80,132,844 (-)EnsemblGRCm38mm10GRCm38
MGSCv371281,221,533 - 81,233,831 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1281,585,444 - 81,597,538 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1236.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
2310015A10RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
2310015A10RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
2310015A10RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24200680   PMID:27899360   PMID:37196079  



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Variants in 2310015A10Rik
356 total Variants

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:73
Interacting mature miRNAs:73
Transcripts:ENSMUST00000180643
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse

1 to 10 of 25 rows






Ensembl Acc Id: ENSMUST00000180643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,745 - 80,179,689 (-)Ensembl
GRCm38.p6 Ensembl1280,123,992 - 80,132,844 (-)Ensembl
Ensembl Acc Id: ENSMUST00000218078
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,167,913 (-)Ensembl
GRCm38.p6 Ensembl1280,120,546 - 80,121,139 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,576 (-)Ensembl
GRCm38.p6 Ensembl1280,120,546 - 80,132,802 (-)Ensembl
Ensembl Acc Id: ENSMUST00000220125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,319 - 80,179,391 (-)Ensembl
GRCm38.p6 Ensembl1280,120,549 - 80,132,596 (-)Ensembl
Ensembl Acc Id: ENSMUST00000240897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,317 - 80,179,685 (-)Ensembl
Ensembl Acc Id: ENSMUST00000241049
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,177,623 - 80,179,607 (-)Ensembl
Ensembl Acc Id: ENSMUST00000241418
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,765 - 80,179,677 (-)Ensembl
Ensembl Acc Id: ENSMUST00000241751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,179,660 (-)Ensembl
Ensembl Acc Id: ENSMUST00000241823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,179,652 (-)Ensembl
Ensembl Acc Id: ENSMUST00000242487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,319 - 80,179,607 (-)Ensembl
Ensembl Acc Id: ENSMUST00000242702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,319 - 80,179,652 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,881 - 80,179,615 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,179,587 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,587 (-)Ensembl
Ensembl Acc Id: ENSMUST00000245209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,773 - 80,179,068 (-)Ensembl
Ensembl Acc Id: ENSMUST00000245496
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,179,588 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252251
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,160,543 - 80,179,666 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,171,425 - 80,186,153 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,171,425 - 80,186,043 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252254
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,160,337 - 80,173,957 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,589 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,587 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,587 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252258
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,583 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252259
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,319 - 80,179,376 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252260
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,319 - 80,179,375 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,316 - 80,179,372 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252262
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,368 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,354 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,349 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,340 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252266
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,337 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252267
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,330 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252268
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,179,041 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,178,919 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,178,821 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,178,817 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,178,794 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,178,793 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,801 - 80,181,320 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,169,434 - 80,178,852 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,179,679 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252277
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,179,607 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252278
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,179,587 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252279
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,801 - 80,179,602 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252280
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,790 - 80,179,590 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,179,510 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252282
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,881 - 80,179,589 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,881 - 80,179,587 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,801 - 80,179,416 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,179,380 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252286
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,179,375 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252287
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,179,375 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,179,368 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,801 - 80,179,375 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,801 - 80,179,336 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252291
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,881 - 80,179,340 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,171,427 - 80,179,589 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,178,899 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,170,766 - 80,178,816 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252295
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,171,425 - 80,179,340 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,167,320 - 80,173,983 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,177,632 - 80,179,587 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,177,502 - 80,179,436 (-)Ensembl
Ensembl Acc Id: ENSMUST00000252299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1280,177,634 - 80,179,354 (-)Ensembl
RefSeq Acc Id: NR_033514
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391280,167,320 - 80,179,618 (-)NCBI
GRCm381280,120,546 - 80,132,844 (-)ENTREZGENE
MGSCv371281,221,533 - 81,233,831 (-)RGD
Celera1281,585,444 - 81,597,538 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RGD ID:8678652
Promoter ID:EPDNEW_M17357
Type:multiple initiation site
Name:2310015A10Rik_1
Description:Mus musculus RIKEN cDNA 2310015A10 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381280,132,813 - 80,132,873EPDNEW
RGD ID:15094147
Promoter ID:EPDNEWNC_M2053
Type:single initiation site
Name:2310015A10Rik_1
Description:RIKEN cDNA 2310015A10 gene [Source:MGISymbol;Acc:MGI:1916798]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381280,132,813 - 80,132,873EPDNEWNC


1 to 20 of 20 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000097729 Ensembl
MGD MGI:1916798 ENTREZGENE
NCBI Gene 69548 ENTREZGENE
PhenoGen 2310015A10Rik PhenoGen
RNAcentral URS000075D1F1 RNACentral
  URS0000EEB5EF RNACentral
  URS0000EF20CB RNACentral
  URS00025E3964 RNACentral
  URS00025E40B5 RNACentral
  URS00025EA3BD RNACentral
  URS00025EA734 RNACentral
  URS00025EBF19 RNACentral
  URS00025ECEEE RNACentral
  URS00025EE3DB RNACentral
  URS00025EF8E1 RNACentral
  URS00025F2251 RNACentral
  URS00025F5D4B RNACentral
  URS00025F6482 RNACentral
  URS00025F6703 RNACentral
  URS00025F6E1D RNACentral
1 to 20 of 20 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 2310015A10Rik  RIKEN cDNA 2310015A10 gene  5330419I17Rik  RIKEN cDNA 5330419I17 gene  Data merged from RGD:1607171 737654 PROVISIONAL