1700065J18Rik (RIKEN cDNA 1700065J18 gene) - Rat Genome Database

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Gene: 1700065J18Rik (RIKEN cDNA 1700065J18 gene) Mus musculus
Analyze
Symbol: 1700065J18Rik
Name: RIKEN cDNA 1700065J18 gene
RGD ID: 1610809
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC73455
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391192,524,013 - 192,525,047 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1192,517,237 - 192,525,660 (+)EnsemblGRCm39 Ensembl
GRCm381192,841,705 - 192,842,739 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1192,841,661 - 192,842,740 (+)EnsemblGRCm38mm10GRCm38
Celera1199,723,606 - 199,724,640 (+)NCBICelera
Cytogenetic Map1H6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700065J18RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700065J18RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700065J18RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  



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Variants in 1700065J18Rik
59 total Variants

1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse

1 to 10 of 23 rows





RefSeq Transcripts NR_040468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK006895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL365326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000188648
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,523,938 - 192,525,050 (+)Ensembl
GRCm38.p6 Ensembl1192,841,671 - 192,842,740 (+)Ensembl
Ensembl Acc Id: ENSMUST00000190576
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,523,945 - 192,525,050 (+)Ensembl
GRCm38.p6 Ensembl1192,841,661 - 192,842,734 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267377
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,517,237 - 192,525,048 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267378
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,522,627 - 192,525,660 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267379
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,523,452 - 192,525,048 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267380
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,523,735 - 192,525,048 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267381
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,523,772 - 192,525,050 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,523,938 - 192,525,050 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,523,938 - 192,525,050 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,523,947 - 192,525,050 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267385
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,523,947 - 192,525,050 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267386
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,523,947 - 192,525,050 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267387
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,523,960 - 192,525,050 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267388
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,524,607 - 192,525,050 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267389
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1192,524,609 - 192,525,048 (+)Ensembl
RefSeq Acc Id: NR_040468
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391192,524,013 - 192,525,047 (+)NCBI
GRCm381192,841,705 - 192,842,739 (+)ENTREZGENE
Celera1199,723,606 - 199,724,640 (+)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RGD ID:6876146
Promoter ID:EPDNEW_M1524
Type:multiple initiation site
Name:1700065J18Rik_1
Description:Mus musculus RIKEN cDNA 1700065J18 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381192,841,687 - 192,841,747EPDNEW


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000100872 Ensembl
MGD MGI:1920705 ENTREZGENE
NCBI Gene 73455 ENTREZGENE
PhenoGen 1700065J18Rik PhenoGen
RNAcentral URS000075A395 RNACentral
  URS000077029F RNACentral
  URS0000812088 RNACentral