A430078I02Rik (RIKEN cDNA A430078I02 gene) - Rat Genome Database

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Gene: A430078I02Rik (RIKEN cDNA A430078I02 gene) Mus musculus
Analyze
Symbol: A430078I02Rik
Name: RIKEN cDNA A430078I02 gene
RGD ID: 1610457
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC320486; T25621; uncharacterized protein LOC320486
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,447,259 - 86,457,812 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl686,447,259 - 86,457,812 (-)EnsemblGRCm39 Ensembl
GRCm38686,470,277 - 86,480,830 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,470,277 - 86,480,830 (-)EnsemblGRCm38mm10GRCm38
Celera688,407,996 - 88,418,724 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
A430078I02RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
A430078I02RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
A430078I02RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:2216762   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693  



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Variants in A430078I02Rik
463 total Variants

Predicted Target Of
Summary Value
Count of predictions:304
Count of miRNA genes:148
Interacting mature miRNAs:151
Transcripts:ENSMUST00000129343, ENSMUST00000154066
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 46 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671958006105958152Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67707698389976982Mouse
10412119Stv_mstriatal volumne (mouse)Not determined660026991100026967Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671958006105958152Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67797698396976961Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse

1 to 10 of 46 rows






Ensembl Acc Id: ENSMUST00000129343
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl686,447,259 - 86,457,812 (-)Ensembl
GRCm38.p6 Ensembl686,470,277 - 86,480,770 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl686,447,787 - 86,457,812 (-)Ensembl
GRCm38.p6 Ensembl686,470,805 - 86,480,830 (-)Ensembl
RefSeq Acc Id: NR_131125
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,447,259 - 86,457,812 (-)NCBI
GRCm38686,470,277 - 86,480,830 (-)NCBI
Sequence:
RefSeq Acc Id: NR_131126
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,447,259 - 86,457,812 (-)NCBI
GRCm38686,470,277 - 86,480,830 (-)NCBI
Sequence:
RGD ID:6890286
Promoter ID:EPDNEW_M8594
Type:single initiation site
Name:A430078I02Rik_1
Description:Mus musculus RIKEN cDNA A430078I02 gene , transcript variant2, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38686,480,740 - 86,480,800EPDNEW


1 to 10 of 10 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000085589 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000129343 ENTREZGENE
  ENSMUST00000154066 ENTREZGENE
MGD MGI:2444132 ENTREZGENE
NCBI Gene 320486 ENTREZGENE
PhenoGen A430078I02Rik PhenoGen
RNAcentral URS0000812143 RNACentral
  URS00008121A5 RNACentral
  URS00008C41ED RNACentral
  URS00008C4228 RNACentral
1 to 10 of 10 rows