1700109I08Rik (RIKEN cDNA 1700109I08 gene) - Rat Genome Database

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Gene: 1700109I08Rik (RIKEN cDNA 1700109I08 gene) Mus musculus
Analyze
Symbol: 1700109I08Rik
Name: RIKEN cDNA 1700109I08 gene
RGD ID: 1610269
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC73591; uncharacterized protein LOC73591
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391439,377,620 - 39,407,250 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1439,376,075 - 39,434,858 (+)EnsemblGRCm39 Ensembl
GRCm381439,655,663 - 39,685,293 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1439,655,663 - 39,685,293 (+)EnsemblGRCm38mm10GRCm38
Celera1435,838,210 - 35,869,076 (+)NCBICelera
Cytogenetic Map14BNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700109I08RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700109I08RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
1700109I08RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  



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Variants in 1700109I08Rik
1063 total Variants

1 to 10 of 21 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse

1 to 10 of 21 rows






Ensembl Acc Id: ENSMUST00000185680
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1439,377,567 - 39,407,251 (+)Ensembl
GRCm38.p6 Ensembl1439,655,663 - 39,685,293 (+)Ensembl
Ensembl Acc Id: ENSMUST00000330101
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1439,376,075 - 39,434,849 (+)Ensembl
Ensembl Acc Id: ENSMUST00000330102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1439,377,567 - 39,434,858 (+)Ensembl
Ensembl Acc Id: ENSMUST00000330103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1439,377,570 - 39,434,858 (+)Ensembl
Ensembl Acc Id: ENSMUST00000330104
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1439,377,570 - 39,434,856 (+)Ensembl
Ensembl Acc Id: ENSMUST00000330105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1439,377,573 - 39,434,849 (+)Ensembl
Ensembl Acc Id: ENSMUST00000330106
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1439,377,587 - 39,434,852 (+)Ensembl
Ensembl Acc Id: ENSMUST00000330107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1439,377,587 - 39,434,846 (+)Ensembl
Ensembl Acc Id: ENSMUST00000330108
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1439,377,625 - 39,434,848 (+)Ensembl
Ensembl Acc Id: ENSMUST00000330109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1439,377,617 - 39,407,251 (+)Ensembl
Ensembl Acc Id: ENSMUST00000330110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1439,377,631 - 39,379,058 (+)Ensembl
Ensembl Acc Id: ENSMUST00000330111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1439,376,077 - 39,377,083 (+)Ensembl
RefSeq Acc Id: NR_045936
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391439,377,620 - 39,407,250 (+)NCBI
GRCm381439,655,663 - 39,685,293 (+)ENTREZGENE
Celera1435,838,210 - 35,869,076 (+)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
RGD ID:8681974
Promoter ID:EPDNEW_M19018
Type:multiple initiation site
Name:1700109I08Rik_1
Description:Mus musculus RIKEN cDNA 1700109I08 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381439,655,660 - 39,655,720EPDNEW
RGD ID:15094415
Promoter ID:EPDNEWNC_M2329
Type:multiple initiation site
Name:1700109I08Rik_1
Description:RIKEN cDNA 1700109I08 gene [Source:MGISymbol;Acc:MGI:1920841]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381439,655,660 - 39,655,720EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000101261 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000185680 ENTREZGENE
MGD MGI:1920841 ENTREZGENE
NCBI Gene 73591 ENTREZGENE
PhenoGen 1700109I08Rik PhenoGen
RNAcentral URS000075DFB3 RNACentral