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Gene: 4930405A21Rik (RIKEN cDNA 4930405A21 gene) Mus musculus

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Symbol:

4930405A21Rik

Name:

RIKEN cDNA 4930405A21 gene

RGD ID:

1610260

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC74846

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	156,556,459 - 156,562,829 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	156,538,197 - 156,562,834 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	156,714,539 - 156,720,909 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	156,714,540 - 156,720,909 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	2	162,650,605 - 162,656,959 (-)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	77.68	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
4930405A21Rik	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
4930405A21Rik	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
4930405A21Rik	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:14610273	PMID:16141072	PMID:16141073	PMID:18799693

Variants in 4930405A21Rik
371 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	226
Count of miRNA genes:	184
Interacting mature miRNAs:	210
Transcripts:	ENSMUST00000130089, ENSMUST00000139042
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301907	Rends_m	renal disease susceptibility (mouse)			Not determined		2	135699221	169699361	Mouse
1301783	Bhr1_m	bronchial hyperresponsiveness 1 (mouse)			Not determined		2	142593476	178442452	Mouse
12790983	Bwq12_m	body weight QTL 12 (mouse)					2	148238204	181755017	Mouse
1301019	Bmd6_m	bone mineral density 6 (mouse)			Not determined		2	151778297	181755017	Mouse
12910799	Pwgrq2_m	pre-weaning growth rate QTL 2 (mouse)					2	118589253	160611165	Mouse
1558939	Gnf1_m	growth and fatness 1 (mouse)			Not determined		2	143773445	169117924	Mouse
13825247	Agoc2_m	agouti coat color QTL 2 (mouse)					2	151841920	159841920	Mouse
12910795	Pwbwq5_m	post-weaning body weight QTL 5 (mouse)					2	118589253	160611165	Mouse
1300867	Lore2_m	loss of righting induced by ethanol 2 (mouse)			Not determined		2	144515861	180896594	Mouse
1558917	Gct8_m	granulosa cell tumorigenesis 8 (mouse)			Not determined		2	149236907	181755017	Mouse
12910812	Pwgrq1_m	pre-weaning growth rate QTL 1 (mouse)					2	118589253	160611165	Mouse
12910814	Pwbwq1_m	pre-weaning body weight QTL 1 (mouse)					2	118589253	160611165	Mouse
14747002	Mancz3_m	mandible centroid size 3 (mouse)					2	152329820	181755017	Mouse
1300751	Bdt1_m	bone density traits 1 (mouse)			Not determined		2	149988902	181755017	Mouse
1300622	Cfld1_m	cystic fibrosis lung disease 1 (mouse)			Not determined		2	155823920	181755017	Mouse
10054066	Bwq9_m	body weight QTL 9 (mouse)			Not determined		2	135699221	169699361	Mouse
1301822	Pgia2_m	proteoglycan induced arthritis 2 (mouse)			Not determined		2	123937311	157937424	Mouse
10043956	Gnf5_m	growth and fatness 5 (mouse)			Not determined		2	135699221	169699361	Mouse
1558842	Tailq2_m	tail length QTL 2 (mouse)			Not determined		2	151640941	162737074	Mouse
5491197	Mobq5_m	multigenic obesity QTL 5 (mouse)			Not determined		2	65269746	162518926	Mouse
10412080	Hylaq2_m	Hyperlocomotor activity related QTL 2 (mouse)			Not determined		2	151640941	164119146	Mouse
5491196	Mobq6_m	multigenic obesity QTL 6 (mouse)			Not determined		2	85724269	180896594	Mouse
1357862	Epfq1_m	epididymal fat pad weight QTL 1 (mouse)			Not determined		2	151640941	162737074	Mouse
1301031	Bdln3_m	body length 3 (mouse)			Not determined		2	127664019	161664118	Mouse
11341717	Rvfs1_m	Rift Valley fever susceptibility 1 (mouse)					2	135432544	173449616	Mouse
4141703	Chlq13_m	circulating hormone level QTL 13 (mouse)			Not determined		2	135699221	169699361	Mouse
1357484	Bsbob_m	BSB obesity (mouse)			Not determined		2	143773445	165665019	Mouse
27226788	Feml13_m	femur length 13, 10 week (mouse)					2	102630345	159941920	Mouse
4142211	Nilac3_m	nicotine induced locomotor activity 3 (mouse)			Not determined		2	148664893	181755017	Mouse
1301294	Hrtfm5_m	heart failure modifier 5 (mouse)			Not determined		2	122883015	156883131	Mouse
1558867	Gnf3_m	growth and fatness 3 (mouse)			Not determined		2	152699221	169117924	Mouse
11038701	Ltpr2e_m	Leishmania tropica response 2e (mouse)					2	150212221	181755017	Mouse
11038702	Ltpr2_m	Leishmania tropica response 2 (mouse)					2	103095716	167212356	Mouse
1301588	Hrec_m	hemotopoietic response to early cytokines (mouse)			Not determined		2	154553217	159428450	Mouse
4142450	Lmr16_m	leishmaniasis resistance 16 (mouse)			Not determined		2	150212221	181755017	Mouse
1301085	Lrnx10_m	learning-contextual 10 (mouse)			Not determined		2	150212221	181755017	Mouse
11353826	Bdln10_m	body length 10 (mouse)					2	140441482	174441482	Mouse
1558852	Gnf2_m	growth and fatness 2 (mouse)			Not determined		2	152699221	162197085	Mouse
1300806	Aod4_m	autoimmune ovarian dysgenesis 4 (mouse)			Not determined		2	145228719	179228841	Mouse
4141033	Wg2d_m	weight gain in high growth mice 2d (mouse)			Not determined			143773445	160303008	Mouse
1357772	Scfq1_m	subcutaneous fat pad weight QTL 1 (mouse)			Not determined		2	151640941	162737074	Mouse
1301961	Bts1_m	bladder tumor susceptibility 1 (mouse)			Not determined		2	132024159	166024330	Mouse
1301618	Bglu1_m	blood glucose level 1 (mouse)			Not determined		2	117942930	174324863	Mouse
27226749	Femd10_m	femur midshaft diameter 10, 16 week (mouse)					2	124441920	168241920	Mouse
1302143	Bwq5_m	body weight (mouse)			Not determined		2	127664019	161664118	Mouse
1302013	Tbbmd3_m	total body bone mineral density 3 (mouse)			Not determined		2	145196949	179197085	Mouse
12880427	V25Dq3_m	vitamin D inactive form serum level QTL 3 (mouse)					2	129341920	163341920	Mouse
13504830	Bacsq1_m	baculum shape QTL 1 (mouse)					2	145716184	161016184	Mouse
12801456	Intmrm1_m	intima/media ratio modifier 1 (mouse)					2	142428347	176428450	Mouse
1357537	Lith12_m	lithogenic gene 12 (mouse)			Not determined		2	156196464	181755017	Mouse
11049566	Lmr28e_m	leishmaniasis resistance 28e (mouse)					2	133144911	167145058	Mouse
12801461	Intim1_m	intima modifier 1 (mouse)					2	142428347	176428450	Mouse
11049567	Lmr28f_m	leishmaniasis resistance 28f (mouse)					2	133144911	167145058	Mouse
1301865	Hdlq19_m	HDL QTL 19 (mouse)			Not determined		2	145518775	179518926	Mouse
12910520	Scgq3_m	spontaneous crescentic glomerulonephritis QTL 3 (mouse)					2	151709273	174389124	Mouse
1300846	Pbwg11_m	postnatal body weight growth 11 (mouse)			Not determined		2	138966600	172966729	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NR_040505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK015092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX004793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000130089

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,557,498 - 156,562,746 (-)	Ensembl
GRCm38.p6 Ensembl	2	156,715,952 - 156,720,826 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000139042

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,556,459 - 156,562,829 (-)	Ensembl
GRCm38.p6 Ensembl	2	156,714,540 - 156,720,909 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000282230

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,538,197 - 156,562,764 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000282231

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,538,197 - 156,562,736 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000282232

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,538,208 - 156,562,744 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000282233

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,549,856 - 156,562,726 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000282234

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,549,856 - 156,562,714 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000282235

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,549,856 - 156,562,701 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000282236

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,549,856 - 156,562,700 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000282237

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,556,452 - 156,562,834 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000282238

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,556,452 - 156,562,768 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000282239

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,556,452 - 156,562,712 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000282240

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,556,555 - 156,562,758 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000282241

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	156,538,208 - 156,540,089 (-)	Ensembl

RefSeq Acc Id:

NR_040505

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	156,556,459 - 156,562,829 (-)	NCBI
GRCm38	2	156,714,539 - 156,720,909 (-)	ENTREZGENE
Celera	2	162,650,605 - 162,656,959 (-)	ENTREZGENE
cM Map	2		ENTREZGENE

Sequence:

show sequence

ACCGCGCGGCCCACGCCCTGGCCGGCCGGTCTTGAAAGGGAGTGCGCGCCCGCGCCAACTCGCGCATGCCCGAGTGAGGGGCTCCGCCCTCTCGAACCGCCCCGCCAAACCGGTTCCAGCTGGAACGC
AATGCGTGGTCTGTACGGGAGTTGGAGTGGCCGTCCGTCCCTGCGGGCTCACCCTGGTGGCGACGCCTCGCTGTAGCAGATGGTGGCAGAGTGTCATAAGGGGCAGTGTCCTTTTCTTAACTCGGCAC
AAAAGTACTACATGGACCAGCTGCAGCTCTGGCCAGAAGCCTGGCGATCTGGTGGCTCCGGCTCTCCTAGGTGGCAGGATCAAGATGTAAAACTCTCAACTACTTCTGCCACACCATGCCTACCTGCC
TGCTGCCACGCTCCCCACCATGATGATCTTGGACTAAGCCTCTGAAACTAAGCCAGCCTCCAGTTCCATGCTTTCCTTTATAAGAGTCACCTTGAGCCAGATGGGAAACCAAGAGACTTGAGACAAAA
TGAGGTTGTCCTCCCATCCTTCTGCCACCTCCATGGGGAAAACATGGCCTGGCTGGGACACTGGCTCCTGAACAGCTTTTGGGCCCAGGGTATAGGACACAGTGGGCAAAGGCGGCTGATCGGCAAGC
TCATACCTAAGTGTTTGCTGTTGTCCCCCACTGAGATGGTACACAATGTAGAGTGTGACTGCGTAACGACCAAGAGATATCACGTTGGCCCCAGGACCAAGCAGGGAGAGAAAGGATGAGCAAACTCT
TAGAGGAGGATTGGAAAAGGAGCCTGGATTCTGCGTGGGTCAGGACTCCCAAGGAAATCCACCTAGAGTGACTTCCCGTGTGCAGATAGACTTGGGCAAGGCCTGCCTCCTTTGGATAAGAGCTTAAA
GAGAAAATGCAAAAGAAACAGCCAACCTGTCAGGGACACTCAGGGGAAATAGGAAGGGCCCAGAAATGGCTGAGTTGGAAAATAAATCTGTCAGTTTTA

hide sequence

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000086638	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000139042	ENTREZGENE
MGD	MGI:1922096	ENTREZGENE
NCBI Gene	74846	ENTREZGENE
PhenoGen	4930405A21Rik	PhenoGen
RNAcentral	URS000075D158	RNACentral
	URS0000EEB293	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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