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Gene: 1700128A07Rik (RIKEN cDNA 1700128A07 gene) Mus musculus

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Symbol:

1700128A07Rik

Name:

RIKEN cDNA 1700128A07 gene

RGD ID:

1609751

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC73631; uncharacterized protein LOC73631

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	106,654,621 - 106,723,954 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	106,654,612 - 106,724,008 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	106,417,187 - 106,486,520 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	106,417,187 - 106,486,520 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	14	105,002,395 - 105,051,991 (-)	NCBI		Celera
Cytogenetic Map	14	E2.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
1700128A07Rik	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
1700128A07Rik	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
1700128A07Rik	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:24316575

Variants in 1700128A07Rik
3037 total Variants

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558823	Tbbmd6_m	total body bone mineral density 6 (mouse)			Not determined		14	77073696	111073787	Mouse
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20887473	121269804	Mouse
4142508	Tgq25_m	triglyceride QTL 25 (mouse)			Not determined			85134068	119134068	Mouse
1558819	Ossc2_m	osteosarcoma susceptibility 2 (mouse)			Not determined		14	74394976	108395093	Mouse
12792981	Fbmd5_m	femoral bone mineral density 5, females only (mouse)					14	99838217	125033054	Mouse
1301844	Pgia29_m	proteoglycan induced arthritis 29 (mouse)			Not determined		14	74352296	108352384	Mouse
10755523	Hgb2_m	hemoglobin 2 (mouse)					14	105884654	125139656	Mouse
14928314	Manh77_m	mandible shape 77 (mouse)					14	76767790	110767790	Mouse
12798541	Scvg3_m	subcutaneous vessel growth QTL 3 (mouse)					14	105544636	117275989	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NR_045938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK007305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CF105002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CF105274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT025845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000186311

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,612 - 106,723,973 (-)	Ensembl
GRCm38.p6 Ensembl	14	106,417,187 - 106,486,520 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000186643

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,680,627 - 106,723,974 (-)	Ensembl
GRCm38.p6 Ensembl	14	106,443,211 - 106,486,492 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294144

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,618 - 106,724,008 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294145

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,612 - 106,723,997 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294146

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,612 - 106,723,972 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294147

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,620 - 106,723,972 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294148

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,620 - 106,723,972 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294149

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,612 - 106,723,961 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294150

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,620 - 106,723,960 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294151

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,620 - 106,723,959 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294152

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,620 - 106,723,956 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294153

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,624 - 106,723,959 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294154

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,625 - 106,723,959 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294155

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,625 - 106,723,958 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294156

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,625 - 106,723,956 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294157

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,620 - 106,723,942 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294158

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,620 - 106,723,942 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294159

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,625 - 106,723,942 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294160

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,625 - 106,723,942 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294161

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,628 - 106,723,941 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294162

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,623 - 106,723,934 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294163

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,625 - 106,723,927 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294164

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,660,342 - 106,723,972 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294165

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,660,340 - 106,723,959 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294166

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,660,346 - 106,723,952 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294167

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,660,363 - 106,723,927 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294168

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,661,025 - 106,723,956 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294169

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,680,640 - 106,723,956 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294170

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,684,111 - 106,723,955 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294171

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,620 - 106,688,417 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294172

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,695,264 - 106,724,008 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294173

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,695,272 - 106,723,980 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294174

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,620 - 106,666,001 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294175

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,628 - 106,666,002 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294176

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,680,642 - 106,688,464 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294177

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,695,272 - 106,702,965 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294178

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,625 - 106,662,210 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294179

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,654,623 - 106,662,206 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294180

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,695,272 - 106,699,621 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294181

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,695,272 - 106,696,320 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294182

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,695,272 - 106,695,998 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294183

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,695,272 - 106,695,924 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000294184

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	106,723,536 - 106,723,942 (-)	Ensembl

RefSeq Acc Id:

NR_045938

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	106,654,621 - 106,723,954 (-)	NCBI
GRCm38	14	106,417,187 - 106,486,520 (-)	NCBI
Celera	14	105,002,395 - 105,051,991 (-)	NCBI
cM Map	14		ENTREZGENE

Sequence:

show sequence

TCAGGGTCCCACAGAAGATCAAACTACACTTCTCTGTTATATGTGTGGGAGGCCGAGTTCAATTCCATGAAGGGTCCCTGGTTGGCAGTTCAGTCTCTAGAATTTCCTTTAATTTTTGTTCAAAGGCA
GTGTCCCTGATGGCAGGAGAAGCATGGCAACAGGAACCGGAAGCTAAGAGATCACATTTCCATTGTGCACAGGAAGCAGAGAGGGAATTTCTATCAACTAGATGACATCATGAATGTAACAGTAGTAA
GGTTGGTAGTGAAATCACTCCTGATAAGAGGAGTTTGAAGTCTATTAGGAAGTGGAAGAGCAATGAAGTGACTACCCCTACGAGAACATTTTACATCACAGTTGCAAAGAACACATCTATCCTCTTCA
TTAAATCAACTGGTGTCCTTGAAGCTCCGGCTCAGCTGCCCTCTGACCCAAGAGAAGCAACAAAATCCTAAATCTCACTCCTCTGGCAAGATCCACCAGGAGGTGATTTGTTGAACAGCTTGTTATGT
GTGTTGAGAGAAGATCTTCTACAACTATTAGGAACAAACACAAGCCCAAGTTTTGAAAAAGTCAAGCAAAAATGAAATTGAAATAGGATAATCCATGGGGACATAGGGAAGAGACGATTGTCCTCACT
CCATCTTCTTCCAAGACCCTCAGAATGTCTTCCTAGTAGTAGAAAATAAGACAGAACCACGATGCTTGAGAATACACCAGAGCCACGAGAAGATAAGAGTAAATGATAAACATCAGCTGAGACAATTT
TACTTCATCAAAAATCTTCTAAAAGTTCACTTTTCTGCTTTATTCTGTCTTGTAAAAGTTAAAAATAAATCTTTTGCTTGCTTCATAACATC

hide sequence

RGD ID:

8683168

Promoter ID:

EPDNEW_M19614

Type:

multiple initiation site

Name:

1700128A07Rik_1

Description:

Mus musculus RIKEN cDNA 1700128A07 gene , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	14	106,486,508 - 106,486,568	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000099794	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000186311	ENTREZGENE
MGD	MGI:1920881	ENTREZGENE
NCBI Gene	73631	ENTREZGENE
PhenoGen	1700128A07Rik	PhenoGen
RNAcentral	URS000075D3DF	RNACentral
	URS000078105D	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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