1700128A07Rik (RIKEN cDNA 1700128A07 gene) - Rat Genome Database

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Gene: 1700128A07Rik (RIKEN cDNA 1700128A07 gene) Mus musculus
Analyze
Symbol: 1700128A07Rik
Name: RIKEN cDNA 1700128A07 gene
RGD ID: 1609751
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC73631; uncharacterized protein LOC73631
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914106,654,621 - 106,723,954 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14106,654,621 - 106,723,954 (-)EnsemblGRCm39 Ensembl
GRCm3814106,417,187 - 106,486,520 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14106,417,187 - 106,486,520 (-)EnsemblGRCm38mm10GRCm38
Celera14105,002,395 - 105,051,991 (-)NCBICelera
Cytogenetic Map14E2.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 1700128A07Rik
3037 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse
4142508Tgq25_mtriglyceride QTL 25 (mouse)Not determined85134068119134068Mouse
12792981Fbmd5_mfemoral bone mineral density 5, females only (mouse)1499838217125033054Mouse
12798541Scvg3_msubcutaneous vessel growth QTL 3 (mouse)14105544636117275989Mouse
10755523Hgb2_mhemoglobin 2 (mouse)14105884654125139656Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000186311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14106,654,621 - 106,723,954 (-)Ensembl
GRCm38.p6 Ensembl14106,417,187 - 106,486,520 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14106,680,645 - 106,723,926 (-)Ensembl
GRCm38.p6 Ensembl14106,443,211 - 106,486,492 (-)Ensembl
RefSeq Acc Id: NR_045938
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914106,654,621 - 106,723,954 (-)NCBI
GRCm3814106,417,187 - 106,486,520 (-)NCBI
Celera14105,002,395 - 105,051,991 (-)NCBI
cM Map14 ENTREZGENE
Sequence:
Promoters
RGD ID:8683168
Promoter ID:EPDNEW_M19614
Type:multiple initiation site
Name:1700128A07Rik_1
Description:Mus musculus RIKEN cDNA 1700128A07 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3814106,486,508 - 106,486,568EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000099794 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000186311 ENTREZGENE
MGD MGI:1920881 ENTREZGENE
NCBI Gene 73631 ENTREZGENE
PhenoGen 1700128A07Rik PhenoGen
RNAcentral URS000075D3DF RNACentral