4930594C11Rik (RIKEN cDNA 4930594C11 gene) - Rat Genome Database

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Gene: 4930594C11Rik (RIKEN cDNA 4930594C11 gene) Mus musculus
Analyze
Symbol: 4930594C11Rik
Name: RIKEN cDNA 4930594C11 gene
RGD ID: 1609141
MGI Page MGI
Description:
Type: pseudo (Ensembl: TEC)
RefSeq Status: VALIDATED
Related Functional Gene: Gspt1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,524,932 - 37,527,686 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,524,932 - 37,527,686 (-)EnsemblGRCm39 Ensembl
GRCm38137,485,851 - 37,488,605 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,485,851 - 37,488,605 (-)EnsemblGRCm38mm10GRCm38
MGSCv37137,542,696 - 37,545,450 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera137,267,648 - 37,270,401 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:141
Interacting mature miRNAs:141
Transcripts:ENSMUST00000151866
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000192316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl137,524,932 - 37,527,686 (-)Ensembl
GRCm38.p6 Ensembl137,485,851 - 37,488,605 (-)Ensembl
RefSeq Acc Id: NR_024017
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39137,524,932 - 37,527,686 (-)NCBI
GRCm38137,485,851 - 37,488,605 (-)ENTREZGENE
MGSCv37137,542,696 - 37,545,450 (-)RGD
Celera137,267,648 - 37,270,401 (-)RGD
cM Map1 ENTREZGENE
Sequence:
Promoters
RGD ID:6873478
Promoter ID:EPDNEW_M190
Type:initiation region
Name:4930594C11Rik_1
Description:Mus musculus RIKEN cDNA 4930594C11 gene , non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38137,488,602 - 37,488,662EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000103948 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000192316 ENTREZGENE
MGD MGI:1924883 ENTREZGENE
NCBI Gene 77633 ENTREZGENE
PhenoGen 4930594C11Rik PhenoGen