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Gene: 4930431P03Rik (RIKEN cDNA 4930431P03 gene) Mus musculus

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Symbol:

4930431P03Rik

Name:

RIKEN cDNA 4930431P03 gene

RGD ID:

1608697

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC73895

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	45,192,357 - 45,198,764 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	45,192,672 - 45,198,783 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	44,954,900 - 44,961,307 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	44,955,215 - 44,961,326 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	45,574,890 - 45,580,982 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	14	41,146,398 - 41,152,490 (-)	NCBI		Celera
Cytogenetic Map	14	C1	NCBI
cM Map	14	22.65	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
4930431P03Rik	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
4930431P03Rik	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
4930431P03Rik	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015

PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Variants in 4930431P03Rik
180 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	120
Count of miRNA genes:	117
Interacting mature miRNAs:	119
Transcripts:	ENSMUST00000166072, ENSMUST00000166127
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20887473	121269804	Mouse
1300625	Cosz2_m	cocaine seizure 2 (mouse)			Not determined		14	35045797	68785736	Mouse
1301777	Bglq15_m	body growth late QTL 15 (mouse)			Not determined		14	42962416	76962593	Mouse
1357527	Epfpq1_m	epididymal fat percentage QTL 1 (mouse)			Not determined		14	21062450	71885801	Mouse
27226775	Tibl7_m	tibia length 7, 5 week (mouse)					14	30321957	48837457	Mouse
27226774	Tibl15_m	tibia length 15, 10 week (mouse)					14	30321957	87937436	Mouse
1300544	Hypn_m	hyperinsulinemia (mouse)			Not determined		14	15160616	49160765	Mouse
1300998	Cia17_m	collagen induced arthritis 17 (mouse)			Not determined		14	30335250	64335381	Mouse
1300805	Mors3_m	modifier of obesity related sterility 3 (mouse)			Not determined		14	43037270	77037418	Mouse
4141864	Mrdq4_m	modifier of retinal degeneration QTL 4 (mouse)			Not determined			9923245	48765082	Mouse
27226752	Femd4_m	femur midshaft diameter 4, 5 week (mouse)					14	13769273	47237457	Mouse
27226748	Femd8_m	femur midshaft diameter 8, 10 week (mouse)					14	13769273	46737457	Mouse
1301424	Skull21_m	skull morphology 21 (mouse)			Not determined		14	42962416	76962593	Mouse
27226744	Metcl6_m	metatarsal-calcaneal length 6, 5 week (mouse)					14	30321957	52937457	Mouse
4141400	Nilac8_m	nicotine induced locomotor activity 8 (mouse)			Not determined		14	43065847	77066045	Mouse
4142485	Modor2_m	modifier of ocular retardation 2 (mouse)			Not determined		14	24926248	58179769	Mouse
4142419	Tgq26_m	triglyceride QTL 26 (mouse)			Not determined			40337319	74337319	Mouse
27226737	Metcl12_m	metatarsal-calcaneal length 12, 10 week (mouse)					14	33221957	59437449	Mouse
1301372	Sluc13_m	susceptibility to lung cancer 13 (mouse)			Not determined		14	18827604	52827726	Mouse
1301091	Bbaa21_m	B.burgdorferi-associated arthritis 21 (mouse)			Not determined		14	43065847	77066045	Mouse
10043887	Cia50_m	collagen induced arthritis QTL 50 (mouse)			Not determined		14	37430185	71430320	Mouse
10043886	Cia49_m	collagen induced arthritis QTL 49 (mouse)			Not determined		14	29996994	63997133	Mouse
1300779	Dyscalc4_m	dystrophic cardiac calcinosis 4 (mouse)			Not determined		14	12212871	46213007	Mouse
27226727	Tibl21_m	tibia length 21, 16 week (mouse)					14	34121957	52937457	Mouse
14746973	Manh76_m	mandible shape 76 (mouse)					14	22287217	56287217	Mouse
1300909	Ath13_m	atherosclerosis 13 (mouse)			Not determined		14	30335250	64335381	Mouse
13506929	Recrq10_m	recombination rate in male meiosis QTL 10 (mouse)					14	27921957	61137449	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NR_045059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC168062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK015279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK133263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BG084429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000166072

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	45,193,369 - 45,198,783 (-)	Ensembl
GRCm38.p6 Ensembl	14	44,955,912 - 44,961,326 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000166127

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	45,192,674 - 45,198,764 (-)	Ensembl
GRCm38.p6 Ensembl	14	44,955,217 - 44,961,307 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000227019

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	45,196,064 - 45,198,737 (-)	Ensembl
GRCm38.p6 Ensembl	14	44,958,607 - 44,961,280 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000228169

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	45,192,672 - 45,198,764 (-)	Ensembl
GRCm38.p6 Ensembl	14	44,955,215 - 44,961,307 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000228658

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	45,196,051 - 45,198,735 (-)	Ensembl
GRCm38.p6 Ensembl	14	44,958,594 - 44,961,278 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000228859

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	45,196,167 - 45,198,735 (-)	Ensembl
GRCm38.p6 Ensembl	14	44,958,710 - 44,961,278 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000374650

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	45,196,078 - 45,198,722 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000374651

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	45,196,427 - 45,198,721 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000374652

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	45,196,464 - 45,198,721 (-)	Ensembl

RefSeq Acc Id:

NR_045059

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	45,192,357 - 45,198,764 (-)	NCBI
GRCm38	14	44,954,900 - 44,961,307 (-)	ENTREZGENE
Celera	14	41,146,083 - 41,152,490 (-)	ENTREZGENE
cM Map	14		ENTREZGENE

Sequence:

show sequence

ACCAGTGTTGTGGTGACGACCGCCTGTGAGCTACAGAGTCTGCTGGGAAAGCATCGACCCAAACTTCCACCATCACTGAGCGGGAAGAGAGAATGAAGAGGTTGGGGAATCTGATAATTGATCTCTAG
AAGATGATCTGTGAGAGGGATGAACTTCATTCAGTCTTGACCCATTACACCAAAAAGGATTTGAACCACAGGTCTGAAATACTCCGGCAGAAGATCAAACAGGGCATAGACAAGTGCTCTCTCAGACA
GAACTCTTCAAGGGGAGCACTGGGTGTGCAAAGACTCACATGAAGACCAAGCTGCACATCTGCTACACATCTGGGAGGCCTAGGTGCAGCCTGTCTATGTTCTTTGGTTGATGGTTCAGACTCTGAGA
GACCCAAGGGTCCAGCCTGCCATCCCAGGGGACTTCCATTCTCCTGCTGCCTCTCCTCTACCTCCATCAGACTCCTGAACCATACAGTTTTCAGAACAATCAACACTTGCTGAGTTTTTGGAAAAAAT
AGAGTCCAAGGATCCCATAAACTGTTCAACATGAAGCCCTAATTCCAGTGGAAAGAATAATGGTGAATTTTATGTGGTTAATCTGTGCCGAGAGGTTTCAGCAAATGGTGTAATTTGAGGTAATTCGG
TGTTAAAGAAGCATGTGAAAGATTAGTGCTAACTTTGAAGATGTATGCTCCTAAAATATGCAGCATGAGTTACCAAAGACTGATCTAGACACCCATCTATAGCCTATAAACCACTGACTTGATCTCTG
TTGTGTGTGGCATTCAGGATTTATCCAGGATATGAAGTGTATACTCCACAAGTAAGCTAAATCCAGTGTCAATGAGAGAATTTACGATTCATATTCCTCTCTTGATAAAACATTCTATGAATGGTGGC
TGCTTACATTTTAAAATTTAAGAATGACCTGAAAACACTAACAGTTGAATCTCACTGTGTAAACACATTTCGGAGATGTCTTCTGGCTCAATTTTGACCCCGTGTGCCTGCAGTTGCTCAGTTCTAAG
GCTGTGAGATTATACCAGGTCATTCTTGCATATAACTGTCTAGGGACAGGAAGAGCTTTGAGAATTCTTAAAGCTGAGAATCTAAGAATCTTCACTGTAAGAAGCTTAAAGTGAAAAGCACAGACTTG
GGAATGGACAAAGCCTTCAGTTCATAAAACTGAGCAGCCAGTTCAGAGCCAAGGAGAACTCTATCCAGACAAGCACTGTTATGTGCAGGATATGTTAGTAAAATAAAAAAAAAAAAAAGCTGCAGCCT
TCAGGAAGACTTTTGGTGCTAGAAATTGCATGCTACAAAATTTTGATACATATCAAGAAAATAAGCTTTGAAATGATTATCTCCTTAGGAGTGGAAAGATTTGAACTGAGTAGATGCTGTGGCCCTGG
TAGAAAAGGGAAGTGAGTTTTCACACAGAGATAAGAACTGCCCTCTTGCTGAATATGCACTTGAGTGGGACTCAGTGAAGTGCTGAGGCACAAGAGCTGCTGGGCATCCAGGAGGAATCTGAGAGTGT
ACATTGTTGCTTGTCCTGATGGGTCATCAAGAGAATTTAAAAGACTTTGAGCTAAAGCATGTAACATGTCTCATGCTTAGCGTTGGCAGACCTTATTCTTGAACCCTACACCCCATCCAGGAAGCATG
TTGCATCTTAAGAGTATTGCCATTAGTGACTGCATTTCTGTTATGTTTCCAAGGCCAGCCACAGGCTGTAGGTCTGTGCTGCTAAATCTGCAGCAAGAGAATAATGCTTAGCTTAATCATTTTTGGGG
GTGGTGGTGGTGGTGCTTGGTTTGAGGTTTTGCTATTTGTTTTTTTTGTTTTTTTTGTTGTTGTTCTTGTAATTGATTTGCTTTGGTTCTAGGGCACTGCATGTATTGACTGCCCCCATTTAAGCCCT
ACTGAGTGAAATGAATGTATTTTTATAAATAAAAAAGTTATCTCCAAGTCTTCACTCCTAAGTACATTGTTTATTTAAGTGTGGTGTCACAGTCCTGTAATCCTAGAACCCAAAAGATGTCTCTCTGC
AAGTTACATGGGGCTTAGACTTCATAATGAGTTCCAAGCCAGCCAGAGATACACATGGTATTGTACTTTTGATGTGAACAGTGTGTCTAACTTTGTGGATACCAACTTAATGATAGAAAAAGTATACA
TGATATTTCCTTGTCATGTACTTTGCTACCACTAAAAGTACTGTGTATGATTGTGTTGGCCAAATTGAGAAGCACAACAGTATTTCTCTAATATCTTCCAGGAAAT

hide sequence

RGD ID:

8682018

Promoter ID:

EPDNEW_M19040

Type:

initiation region

Name:

4930431P03Rik_1

Description:

Mus musculus RIKEN cDNA 4930431P03 gene , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	14	44,961,275 - 44,961,335	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000075042	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000228169	ENTREZGENE
MGD	MGI:1921145	ENTREZGENE
NCBI Gene	73895	ENTREZGENE
PhenoGen	4930431P03Rik	PhenoGen
RNAcentral	URS000075BFCF	RNACentral
	URS00009B9BA7	RNACentral
	URS0000CC0AED	RNACentral
	URS0000CC533E	RNACentral
	URS0000CC7137	RNACentral
	URS0000CCCCD3	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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