4930552N02Rik (RIKEN cDNA 4930552N02 gene) - Rat Genome Database

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Gene: 4930552N02Rik (RIKEN cDNA 4930552N02 gene) Mus musculus
Analyze
Symbol: 4930552N02Rik (Ensembl: Or13f5)
Name: RIKEN cDNA 4930552N02 gene (Ensembl:olfactory receptor family 13 subfamily F member 5)
RGD ID: 1607394
MGI Page MGI
Description:
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC75367
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39452,814,604 - 52,828,269 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl452,814,604 - 52,828,269 (+)EnsemblGRCm39 Ensembl
GRCm38452,814,604 - 52,828,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl452,814,604 - 52,828,269 (+)EnsemblGRCm38mm10GRCm38
Celera452,792,032 - 52,805,717 (+)NCBICelera
Cytogenetic Map4B2NCBI
cM Map428.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4930552N02RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4930552N02RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4930552N02RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  



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Variants in 4930552N02Rik
840 total Variants

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:126
Interacting mature miRNAs:129
Transcripts:ENSMUST00000135738
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 36 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
25314308Mlh1fc1_mMLH1 foci count 1 (mouse)44850000076918237Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
1301213Lgth3_mbody length 3 (mouse)Not determined45010026284100408Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse

1 to 10 of 36 rows
PMC305486P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38452,825,407 - 52,826,343UniSTSGRCm38
MGSCv37452,838,279 - 52,839,215UniSTSGRCm37
Celera452,802,854 - 52,803,790UniSTS
Cytogenetic Map4B2-C2UniSTS
UniSTS:485176  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38452,825,399 - 52,826,358UniSTSGRCm38
MGSCv37452,838,271 - 52,839,230UniSTSGRCm37
Celera452,802,846 - 52,803,805UniSTS
Cytogenetic Map4B2-C2UniSTS






RefSeq Transcripts NR_040661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK016098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000095085   ⟹   ENSMUSP00000092700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl452,825,399 - 52,826,358 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135738
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl452,814,604 - 52,828,269 (+)Ensembl
Ensembl Acc Id: ENSMUST00000219705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl452,824,707 - 52,827,607 (+)Ensembl
RefSeq Acc Id: NR_040661
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39452,814,604 - 52,828,269 (+)NCBI
GRCm38452,814,604 - 52,828,269 (+)ENTREZGENE
Celera452,792,032 - 52,805,717 (+)ENTREZGENE
cM Map4 ENTREZGENE
Sequence:
RGD ID:6883440
Promoter ID:EPDNEW_M5171
Type:multiple initiation site
Name:4930552N02Rik_1
Description:Mus musculus RIKEN cDNA 4930552N02 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38452,814,604 - 52,814,664EPDNEW


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000089717 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000135738 ENTREZGENE
MGD MGI:1922617 ENTREZGENE
NCBI Gene 75367 ENTREZGENE
PhenoGen 4930552N02Rik PhenoGen
RNAcentral URS000075EE9E RNACentral