KRT126P (keratin 126, pseudogene) - Rat Genome Database

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Gene: KRT126P (keratin 126, pseudogene) Homo sapiens
Analyze
Symbol: KRT126P
Name: keratin 126, pseudogene
RGD ID: 1606053
HGNC Page HGNC:32970
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: keratin 126 pseudogene; KRT
Related Functional Gene: KRT76  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,714,138 - 52,721,803 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,715,567 - 52,721,655 (-)EnsemblGRCh38hg38GRCh38
GRCh371253,107,922 - 53,115,587 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361251,394,089 - 51,401,954 (-)NCBINCBI36Build 36hg18NCBI36
Celera1252,754,153 - 52,761,818 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1250,151,901 - 50,159,566 (-)NCBIHuRef
CHM1_11253,074,716 - 53,082,381 (-)NCBICHM1_1
T2T-CHM13v2.01252,678,643 - 52,686,309 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15085952   PMID:16831889  


Genomics

Variants

.
Variants in KRT126P
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:398
Count of miRNA genes:365
Interacting mature miRNAs:393
Transcripts:ENST00000549467
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D12S96  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371253,117,031 - 53,117,213UniSTSGRCh37
GRCh371253,116,928 - 53,117,142UniSTSGRCh37
Build 361251,403,195 - 51,403,409RGDNCBI36
Celera1252,763,262 - 52,763,446UniSTS
Celera1252,763,159 - 52,763,375RGD
Cytogenetic Map12q13.13UniSTS
HuRef1250,161,010 - 50,161,194UniSTS
HuRef1250,160,907 - 50,161,123UniSTS
Marshfield Genetic Map1268.16UniSTS
Marshfield Genetic Map1268.16RGD
Genethon Genetic Map1270.6UniSTS
deCODE Assembly Map1267.16UniSTS
Whitehead-YAC Contig Map12 UniSTS
GeneMap99-G3 RH Map122101.0UniSTS
SHGC-151055  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371253,116,930 - 53,117,029UniSTSGRCh37
Build 361251,403,197 - 51,403,296RGDNCBI36
Celera1252,763,161 - 52,763,260RGD
Cytogenetic Map12q13.13UniSTS
HuRef1250,160,909 - 50,161,008UniSTS
TNG Radiation Hybrid Map1224720.0UniSTS
TNG Radiation Hybrid Map243887.0UniSTS
D12S96  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12q13.13UniSTS
GeneMap99-G3 RH Map122101.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 1 1 4 196 3 6 1 8 1 4 128
Below cutoff 401 453 362 84 172 29 1509 322 905 20 314 264 55 207 891

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000549467
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,715,567 - 52,721,655 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC KRT126P COSMIC
Ensembl Genes ENSG00000257402 Ensembl
GTEx ENSG00000257402 GTEx
HGNC ID HGNC:32970 ENTREZGENE
Human Proteome Map KRT126P Human Proteome Map
NCBI Gene 643865 ENTREZGENE
PharmGKB PA147357849 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-28 KRT126P  keratin 126, pseudogene  KRT126P  keratin 126 pseudogene  Symbol and/or name change 19259463 PROVISIONAL