SNORA30 (small nucleolar RNA, H/ACA box 30) - Rat Genome Database

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Gene: SNORA30 (small nucleolar RNA, H/ACA box 30) Homo sapiens
Analyze
Symbol: SNORA30
Name: small nucleolar RNA, H/ACA box 30
RGD ID: 1602583
HGNC Page HGNC:32620
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleolus.
Type: snorna
RefSeq Status: VALIDATED
Previously known as: ACA30; SNORA30A
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,710,537 - 30,710,665 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,710,537 - 30,710,665 (+)EnsemblGRCh38hg38GRCh38
GRCh371630,721,858 - 30,721,986 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,629,359 - 30,629,487 (+)NCBINCBI36Build 36hg18NCBI36
Celera1629,575,563 - 29,575,691 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,284,632 - 28,284,760 (+)NCBIHuRef
CHM1_11632,039,066 - 32,039,194 (+)NCBICHM1_1
T2T-CHM13v2.01631,097,518 - 31,097,646 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNORA30Humanbis(2-ethylhexyl) phthalate decreases expressionISOSnora30 (Mus musculus)6480464Diethylhexyl Phthalate results in decreased expression of SNORA30 mRNACTDPMID:27405655
SNORA30Humancadmium dichloride decreases expressionEXP 6480464Cadmium Chloride results in decreased expression of SNORA30 mRNACTDPMID:38382870
SNORA30Humanmetformin decreases expressionISOSnora30 (Rattus norvegicus)6480464Metformin results in decreased expression of SNORA30 mRNACTDPMID:31324951
SNORA30HumanMonobutylphthalate increases expressionISOSnora30 (Mus musculus)6480464monobutyl phthalate results in increased expression of SNORA30 mRNACTDPMID:35278568
SNORA30Humanrotenone decreases expressionEXP 6480464Rotenone results in decreased expression of SNORA30 mRNACTDPMID:29955902
SNORA30Humantetrachloromethane decreases expressionISOSnora30 (Mus musculus)6480464Carbon Tetrachloride results in decreased expression of SNORA30 mRNACTDPMID:29987408
SNORA30Humanversicolorin A increases expressionEXP 6480464versicolorin A results in increased expression of SNORA30 mRNACTDPMID:32106047


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNORA30HumanRNA processing involved_inIEARfam:RF00415150520179 RNAcentralGO_REF:0000115

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNORA30Humannucleolus located_inIEARfam:RF00415150520179 RNAcentralGO_REF:0000115


#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
PMID:15199136   PMID:16381836   PMID:19446021   PMID:22658674  



SNORA30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,710,537 - 30,710,665 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,710,537 - 30,710,665 (+)EnsemblGRCh38hg38GRCh38
GRCh371630,721,858 - 30,721,986 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,629,359 - 30,629,487 (+)NCBINCBI36Build 36hg18NCBI36
Celera1629,575,563 - 29,575,691 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,284,632 - 28,284,760 (+)NCBIHuRef
CHM1_11632,039,066 - 32,039,194 (+)NCBICHM1_1
T2T-CHM13v2.01631,097,518 - 31,097,646 (+)NCBIT2T-CHM13v2.0
Snora30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,127,069 - 127,127,175 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,127,046 - 127,127,175 (+)EnsemblGRCm39 Ensembl
GRCm387127,527,897 - 127,528,003 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,527,874 - 127,528,003 (+)EnsemblGRCm38mm10GRCm38
Celera7127,372,994 - 127,373,100 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.57NCBI
Snora30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,569,864 - 191,569,997 (+)NCBIGRCr8
mRatBN7.21182,139,388 - 182,139,521 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,139,388 - 182,139,521 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map1q37NCBI
LOC119872418
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha619,036,211 - 19,036,339 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0617,593,028 - 17,593,156 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,593,028 - 17,593,156 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,393,276 - 17,393,404 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,311,168 - 17,311,296 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,623,788 - 17,623,916 (-)NCBIUU_Cfam_GSD_1.0

.

1 to 5 of 5 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 16p11.2-11.1(chr16:30691912-36160463)x3 copy number gain See cases [RCV000133811] Chr16:30691912..36160463 [GRCh38]
Chr16:30703233..35147508 [GRCh37]
Chr16:30610734..35005009 [NCBI36]
Chr16:16p11.2-11.1		 pathogenic
NM_006662.2(SRCAP):c.1849C>T (p.Gln617Ter) single nucleotide variant Malignant melanoma [RCV000071092] Chr16:30712295 [GRCh38]
Chr16:30723616 [GRCh37]
Chr16:30631117 [NCBI36]
Chr16:16p11.2		 not provided
GRCh38/hg38 16p11.2(chr16:29909613-31438697)x3 copy number gain See cases [RCV000135339] Chr16:29909613..31438697 [GRCh38]
Chr16:29920934..31450018 [GRCh37]
Chr16:29828435..31357519 [NCBI36]
Chr16:16p11.2		 pathogenic
GRCh38/hg38 16p12.1-11.2(chr16:27311746-31193406)x3 copy number gain See cases [RCV000140341] Chr16:27311746..31193406 [GRCh38]
Chr16:27323067..31204727 [GRCh37]
Chr16:27230568..31112228 [NCBI36]
Chr16:16p12.1-11.2		 pathogenic
GRCh38/hg38 16p12.2-11.2(chr16:23752047-31943755)x3 copy number gain See cases [RCV000141141] Chr16:23752047..31943755 [GRCh38]
Chr16:23763368..31955076 [GRCh37]
Chr16:23670869..31862577 [NCBI36]
Chr16:16p12.2-11.2		 pathogenic
1 to 5 of 5 rows

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:161
Interacting mature miRNAs:162
Transcripts:ENST00000384028
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
223 565 294 221 987 490 628 3 131 514 104 510 1317 1174 51 595 165 464 476 35



Ensembl Acc Id: ENST00000384028
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1630,710,537 - 30,710,665 (+)Ensembl
RefSeq Acc Id: NR_002966
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381630,710,537 - 30,710,665 (+)NCBI
GRCh371630,721,858 - 30,721,986 (+)RGD
Build 361630,629,359 - 30,629,487 (+)NCBI Archive
Celera1629,575,563 - 29,575,691 (-)RGD
HuRef1628,284,632 - 28,284,760 (+)RGD
CHM1_11632,039,066 - 32,039,194 (+)NCBI
T2T-CHM13v2.01631,097,518 - 31,097,646 (+)NCBI
Sequence:


1 to 9 of 9 rows
Database
Acc Id
Source(s)
COSMIC SNORA30 COSMIC
Ensembl Genes ENSG00000206755 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000384028 ENTREZGENE
GTEx ENSG00000206755 GTEx
HGNC ID HGNC:32620 ENTREZGENE
Human Proteome Map SNORA30 Human Proteome Map
NCBI Gene 677813 ENTREZGENE
PharmGKB PA144596306 PharmGKB
RNAcentral URS000022C1CA RNACentral
1 to 9 of 9 rows