SNORA36B (small nucleolar RNA, H/ACA box 36B) - Rat Genome Database

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Gene: SNORA36B (small nucleolar RNA, H/ACA box 36B) Homo sapiens
Analyze
Symbol: SNORA36B
Name: small nucleolar RNA, H/ACA box 36B
RGD ID: 1602578
HGNC Page HGNC:32629
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleolus; INTERACTS WITH 4,4'-sulfonyldiphenol (ortholog).
Type: snorna
RefSeq Status: VALIDATED
Previously known as: ACA36b
RGD Orthologs
Mouse
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381220,200,546 - 220,200,676 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1220,200,546 - 220,200,676 (-)EnsemblGRCh38hg38GRCh38
GRCh371220,373,888 - 220,374,018 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361218,440,511 - 218,440,641 (+)NCBINCBI36Build 36hg18NCBI36
Celera1193,593,099 - 193,593,229 (-)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1191,048,311 - 191,048,441 (-)NCBIHuRef
CHM1_11221,646,377 - 221,646,507 (-)NCBICHM1_1
T2T-CHM13v2.01219,439,821 - 219,439,951 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Usher syndrome  (IAGP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IEA)

References
Additional References at PubMed
PMID:15199136   PMID:16381836   PMID:19446021  


Genomics

Comparative Map Data
SNORA36B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381220,200,546 - 220,200,676 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1220,200,546 - 220,200,676 (-)EnsemblGRCh38hg38GRCh38
GRCh371220,373,888 - 220,374,018 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361218,440,511 - 218,440,641 (+)NCBINCBI36Build 36hg18NCBI36
Celera1193,593,099 - 193,593,229 (-)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1191,048,311 - 191,048,441 (-)NCBIHuRef
CHM1_11221,646,377 - 221,646,507 (-)NCBICHM1_1
T2T-CHM13v2.01219,439,821 - 219,439,951 (-)NCBIT2T-CHM13v2.0
Snora36b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,975,123 - 184,975,235 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,975,104 - 184,975,235 (+)EnsemblGRCm39 Ensembl
GRCm381185,242,926 - 185,243,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1185,242,907 - 185,243,038 (+)EnsemblGRCm38mm10GRCm38
Celera1192,200,024 - 192,200,136 (+)NCBICelera
Cytogenetic Map1H5NCBI
cM Map189.46NCBI


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q32.2-44(chr1:209963625-248918469)x3 copy number gain See cases [RCV000134979] Chr1:209963625..248918469 [GRCh38]
Chr1:210136970..249212668 [GRCh37]
Chr1:208203593..247179291 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh38/hg38 1q32.1-42.12(chr1:204764914-225408698)x3 copy number gain See cases [RCV000142054] Chr1:204764914..225408698 [GRCh38]
Chr1:204734042..225596400 [GRCh37]
Chr1:203000665..223663023 [NCBI36]
Chr1:1q32.1-42.12
pathogenic
GRCh38/hg38 1q32.2-44(chr1:207346642-248930485)x3 copy number gain See cases [RCV000143727] Chr1:207346642..248930485 [GRCh38]
Chr1:207519987..249224684 [GRCh37]
Chr1:205586610..247191307 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh38/hg38 1q41(chr1:215206760-222004068)x1 copy number loss See cases [RCV000148255] Chr1:215206760..222004068 [GRCh38]
Chr1:215380103..222177410 [GRCh37]
Chr1:213446726..220244033 [NCBI36]
Chr1:1q41
pathogenic
GRCh38/hg38 1q32.3-44(chr1:214023812-248918469)x3 copy number gain See cases [RCV000050981] Chr1:214023812..248918469 [GRCh38]
Chr1:214197155..249212668 [GRCh37]
Chr1:212263778..247179291 [NCBI36]
Chr1:1q32.3-44
pathogenic
GRCh38/hg38 1q41(chr1:215206760-222004068)x1 copy number loss See cases [RCV000050298] Chr1:215206760..222004068 [GRCh38]
Chr1:215380103..222177410 [GRCh37]
Chr1:213446726..220244033 [NCBI36]
Chr1:1q41
pathogenic
GRCh38/hg38 1q31.1-42.11(chr1:187143981-224299417)x3 copy number gain See cases [RCV000051857] Chr1:187143981..224299417 [GRCh38]
Chr1:187113113..224487119 [GRCh37]
Chr1:185379736..222553742 [NCBI36]
Chr1:1q31.1-42.11
pathogenic
GRCh38/hg38 1q32.2-44(chr1:209646207-248931113)x3 copy number gain See cases [RCV000051861] Chr1:209646207..248931113 [GRCh38]
Chr1:209819552..249225312 [GRCh37]
Chr1:207886175..247191935 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh38/hg38 1q41(chr1:215447347-221971832)x3 copy number gain See cases [RCV000051874] Chr1:215447347..221971832 [GRCh38]
Chr1:215620690..222145174 [GRCh37]
Chr1:213687313..220211797 [NCBI36]
Chr1:1q41
pathogenic
Single allele deletion Usher syndrome [RCV000505151] Chr1:216066818..222607612 [GRCh38]
Chr1:216240159..222780953 [GRCh37]
Chr1:1q41
likely pathogenic
GRCh38/hg38 1q32.2-42.13(chr1:228006998-228061271)x2 copy number loss Orofacial cleft 2 [RCV002481175] Chr1:228006998..228061271 [GRCh38]
Chr1:1q32.2-42.13
association
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:76
Count of miRNA genes:74
Interacting mature miRNAs:76
Transcripts:ENST00000410438
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 50 13 57 42 213 42 97 19 44 34 79 71 2 2 1
Below cutoff 36 1 18 9 34 12 24 22 23 41 35 57 1 2

Sequence


RefSeq Acc Id: ENST00000410438
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1220,200,546 - 220,200,676 (-)Ensembl
RefSeq Acc Id: NR_002994
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381220,200,546 - 220,200,676 (-)NCBI
GRCh371220,373,888 - 220,374,018 (-)RGD
Build 361218,440,511 - 218,440,641 (+)NCBI Archive
Celera1193,593,099 - 193,593,229 (-)RGD
HuRef1191,048,311 - 191,048,441 (-)ENTREZGENE
CHM1_11221,646,377 - 221,646,507 (-)NCBI
T2T-CHM13v2.01219,439,821 - 219,439,951 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC SNORA36B COSMIC
Ensembl Genes ENSG00000222370 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000410438 ENTREZGENE
GTEx ENSG00000222370 GTEx
HGNC ID HGNC:32629 ENTREZGENE
Human Proteome Map SNORA36B Human Proteome Map
NCBI Gene 677818 ENTREZGENE
PharmGKB PA144596313 PharmGKB
RNAcentral URS000068A4EE RNACentral