SNORA36B (small nucleolar RNA, H/ACA box 36B) - Rat Genome Database

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Gene: SNORA36B (small nucleolar RNA, H/ACA box 36B) Homo sapiens
Analyze
Symbol: SNORA36B
Name: small nucleolar RNA, H/ACA box 36B
RGD ID: 1602578
HGNC Page HGNC:32629
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleolus.
Type: snorna
RefSeq Status: VALIDATED
Previously known as: ACA36b
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381220,200,546 - 220,200,676 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1220,200,546 - 220,200,676 (-)EnsemblGRCh38hg38GRCh38
GRCh371220,373,888 - 220,374,018 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361218,440,511 - 218,440,641 (+)NCBINCBI36Build 36hg18NCBI36
Celera1193,593,099 - 193,593,229 (-)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1191,048,311 - 191,048,441 (-)NCBIHuRef
CHM1_11221,646,377 - 221,646,507 (-)NCBICHM1_1
T2T-CHM13v2.01219,439,821 - 219,439,951 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNORA36BHumanUsher syndrome  IAGPRGD:134354448554872ClinVar Annotator: match by term: Usher syndromeClinVarPMID:28041643


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNORA36BHuman4,4'-sulfonyldiphenol increases methylationISORGD:23026086480464bisphenol S results in increased methylation of SNORA36B promoterCTDPMID:33297965
SNORA36BHumanbenzene-1,2,4-triol increases expressionEXP 6480464hydroxyhydroquinone results in increased expression of SNORA36B mRNACTDPMID:39245080


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNORA36BHumanRNA processing involved_inIEARfam:RF00340150520179 RNAcentralGO_REF:0000115

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNORA36BHumannucleolus located_inIEARfam:RF00340150520179 RNAcentralGO_REF:0000115

PMID:15199136   PMID:16381836   PMID:19446021  



SNORA36B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381220,200,546 - 220,200,676 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1220,200,546 - 220,200,676 (-)EnsemblGRCh38hg38GRCh38
GRCh371220,373,888 - 220,374,018 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361218,440,511 - 218,440,641 (+)NCBINCBI36Build 36hg18NCBI36
Celera1193,593,099 - 193,593,229 (-)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1191,048,311 - 191,048,441 (-)NCBIHuRef
CHM1_11221,646,377 - 221,646,507 (-)NCBICHM1_1
T2T-CHM13v2.01219,439,821 - 219,439,951 (-)NCBIT2T-CHM13v2.0
Snora36b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,975,123 - 184,975,235 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,975,104 - 184,975,235 (+)EnsemblGRCm39 Ensembl
GRCm381185,242,926 - 185,243,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1185,242,907 - 185,243,038 (+)EnsemblGRCm38mm10GRCm38
Celera1192,200,024 - 192,200,136 (+)NCBICelera
Cytogenetic Map1H5NCBI
cM Map189.46NCBI

.

Predicted Target Of
Summary Value
Count of predictions:76
Count of miRNA genes:74
Interacting mature miRNAs:76
Transcripts:ENST00000410438
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
2 86 2 9 171 75 195 2 51 247 54 120 438 279 35 67 84 115 132 2



Ensembl Acc Id: ENST00000410438
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1220,200,546 - 220,200,676 (-)Ensembl
RefSeq Acc Id: NR_002994
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381220,200,546 - 220,200,676 (-)NCBI
GRCh371220,373,888 - 220,374,018 (-)RGD
Build 361218,440,511 - 218,440,641 (+)NCBI Archive
Celera1193,593,099 - 193,593,229 (-)RGD
HuRef1191,048,311 - 191,048,441 (-)ENTREZGENE
CHM1_11221,646,377 - 221,646,507 (-)NCBI
T2T-CHM13v2.01219,439,821 - 219,439,951 (-)NCBI
Sequence:


1 to 9 of 9 rows
Database
Acc Id
Source(s)
COSMIC SNORA36B COSMIC
Ensembl Genes ENSG00000222370 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000410438 ENTREZGENE
GTEx ENSG00000222370 GTEx
HGNC ID HGNC:32629 ENTREZGENE
Human Proteome Map SNORA36B Human Proteome Map
NCBI Gene 677818 ENTREZGENE
PharmGKB PA144596313 PharmGKB
RNAcentral URS000068A4EE RNACentral
1 to 9 of 9 rows