Ube3c (ubiquitin protein ligase E3C) - Rat Genome Database

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Gene: Ube3c (ubiquitin protein ligase E3C) Mus musculus
Analyze
Symbol: Ube3c
Name: ubiquitin protein ligase E3C
RGD ID: 1558277
MGI Page MGI
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein K29-linked ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Orthologous to human UBE3C (ubiquitin protein ligase E3C).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AI853514; HECT-type ubiquitin transferase E3C; mKIAA0010; RAUL; RTA-associated ubiquitin ligase; ubiquitin-protein ligase E3C
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39529,774,240 - 29,881,075 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl529,774,240 - 29,881,090 (+)EnsemblGRCm39 Ensembl
GRCm38529,569,242 - 29,676,077 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl529,569,242 - 29,676,092 (+)EnsemblGRCm38mm10GRCm38
MGSCv37529,895,782 - 30,002,617 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36529,900,029 - 30,006,864 (+)NCBIMGSCv36mm8
Celera527,085,025 - 27,191,855 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map515.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14681479   PMID:15489334  
PMID:15782199   PMID:15840001   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18460603   PMID:18799693   PMID:21267068   PMID:21873635   PMID:24194600   PMID:24457600   PMID:27626380  
PMID:28190767   PMID:28378742   PMID:28396413   PMID:29764981   PMID:32325033   PMID:36114006   PMID:37173692   PMID:38355793   PMID:38367882  


Genomics

Comparative Map Data
Ube3c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39529,774,240 - 29,881,075 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl529,774,240 - 29,881,090 (+)EnsemblGRCm39 Ensembl
GRCm38529,569,242 - 29,676,077 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl529,569,242 - 29,676,092 (+)EnsemblGRCm38mm10GRCm38
MGSCv37529,895,782 - 30,002,617 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36529,900,029 - 30,006,864 (+)NCBIMGSCv36mm8
Celera527,085,025 - 27,191,855 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map515.12NCBI
UBE3C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387157,138,926 - 157,269,370 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7157,138,926 - 157,269,370 (+)EnsemblGRCh38hg38GRCh38
GRCh377156,931,620 - 157,062,064 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367156,624,425 - 156,754,823 (+)NCBINCBI36Build 36hg18NCBI36
Build 347156,431,139 - 156,561,538NCBI
Celera7151,358,691 - 151,489,117 (+)NCBICelera
Cytogenetic Map7q36.3NCBI
HuRef7150,661,434 - 150,792,261 (+)NCBIHuRef
CHM1_17156,940,195 - 157,070,555 (+)NCBICHM1_1
T2T-CHM13v2.07158,326,736 - 158,457,202 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27156,160,941 - 156,291,386 (+)NCBI
Ube3c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr846,323,831 - 6,425,085 (-)NCBIGRCr8
mRatBN7.245,648,932 - 5,749,922 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl45,648,690 - 5,750,011 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.042,505,912 - 2,606,710 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl42,505,909 - 2,606,655 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.042,558,670 - 2,659,587 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44889,640 - 991,900 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera44,569,408 - 4,670,465 (+)NCBICelera
Cytogenetic Map4q11NCBI
Ube3c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955579127,533 - 207,522 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955579127,535 - 207,522 (+)NCBIChiLan1.0ChiLan1.0
UBE3C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26193,582,714 - 193,714,341 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1745,592,983 - 45,724,609 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07148,756,024 - 148,886,688 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17160,474,770 - 160,580,046 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7160,474,767 - 160,580,046 (+)Ensemblpanpan1.1panPan2
UBE3C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11619,590,115 - 19,716,664 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1619,589,172 - 19,777,260 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1620,165,614 - 20,284,646 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01621,320,824 - 21,447,476 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1621,320,338 - 21,447,456 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11619,689,672 - 19,816,144 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01620,271,842 - 20,398,679 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01620,324,371 - 20,451,051 (+)NCBIUU_Cfam_GSD_1.0
Ube3c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051181,724,225 - 1,817,737 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936797452,597 - 529,631 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE3C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl181,542,163 - 1,653,982 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1181,542,454 - 1,654,274 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2181,571,168 - 1,621,715 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBE3C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121125,262,772 - 125,397,639 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21125,262,906 - 125,397,898 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607221,496,329 - 21,632,911 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ube3c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248001,274,825 - 1,366,553 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248001,276,697 - 1,366,547 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ube3c
4480 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:477
Count of miRNA genes:351
Interacting mature miRNAs:392
Transcripts:ENSMUST00000049453
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse

Markers in Region
RH125607  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38529,646,972 - 29,647,093UniSTSGRCm38
MGSCv37529,973,512 - 29,973,633UniSTSGRCm37
Celera527,162,751 - 27,162,872UniSTS
Cytogenetic Map5B1UniSTS
Ube3c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5B1UniSTS
cM Map5 UniSTS
AI853514  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38529,675,562 - 29,675,644UniSTSGRCm38
MGSCv37530,002,102 - 30,002,184UniSTSGRCm37
Celera527,191,340 - 27,191,422UniSTS
Cytogenetic Map5B1UniSTS
Whitehead/MRC_RH5365.1UniSTS
AI593684  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38529,647,100 - 29,647,189UniSTSGRCm38
MGSCv37529,973,640 - 29,973,729UniSTSGRCm37
Celera527,162,879 - 27,162,968UniSTS
Cytogenetic Map5B1UniSTS
Whitehead/MRC_RH5367.23UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC104548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC169627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC120731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000049453   ⟹   ENSMUSP00000045998
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,774,240 - 29,881,090 (+)Ensembl
GRCm38.p6 Ensembl529,569,242 - 29,676,092 (+)Ensembl
Ensembl Acc Id: ENSMUST00000197193
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,774,484 - 29,805,185 (+)Ensembl
GRCm38.p6 Ensembl529,569,486 - 29,600,187 (+)Ensembl
Ensembl Acc Id: ENSMUST00000197953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,795,827 - 29,805,722 (+)Ensembl
GRCm38.p6 Ensembl529,590,829 - 29,600,724 (+)Ensembl
Ensembl Acc Id: ENSMUST00000199032   ⟹   ENSMUSP00000142474
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,774,444 - 29,837,482 (+)Ensembl
GRCm38.p6 Ensembl529,569,446 - 29,632,484 (+)Ensembl
Ensembl Acc Id: ENSMUST00000199598
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl529,835,911 - 29,837,482 (+)Ensembl
GRCm38.p6 Ensembl529,630,913 - 29,632,484 (+)Ensembl
RefSeq Acc Id: NM_133907   ⟹   NP_598668
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39529,774,240 - 29,881,075 (+)NCBI
GRCm38529,569,242 - 29,676,077 (+)ENTREZGENE
MGSCv37529,895,782 - 30,002,617 (+)RGD
Celera527,085,025 - 27,191,855 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_598668   ⟸   NM_133907
- UniProtKB: Q8CDJ1 (UniProtKB/Swiss-Prot),   Q8C7W6 (UniProtKB/Swiss-Prot),   Q8BQZ6 (UniProtKB/Swiss-Prot),   Q0VB95 (UniProtKB/Swiss-Prot),   Q8VDL5 (UniProtKB/Swiss-Prot),   Q80U95 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000045998   ⟸   ENSMUST00000049453
Ensembl Acc Id: ENSMUSP00000142474   ⟸   ENSMUST00000199032
Protein Domains
HECT   IQ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80U95-F1-model_v2 AlphaFold Q80U95 1-1083 view protein structure

Promoters
RGD ID:6886260
Promoter ID:EPDNEW_M6581
Type:multiple initiation site
Name:Ube3c_1
Description:Mus musculus ubiquitin protein ligase E3C , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38529,569,225 - 29,569,285EPDNEW
RGD ID:6837886
Promoter ID:MM_KWN:41722
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_133907,   UC008WUL.1,   UC008WUM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36529,895,456 - 29,896,182 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2140998 AgrOrtholog
Ensembl Genes ENSMUSG00000039000 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049453 ENTREZGENE
  ENSMUST00000049453.9 UniProtKB/Swiss-Prot
  ENSMUST00000199032.2 UniProtKB/TrEMBL
Gene3D-CATH Hect, E3 ligase catalytic domain UniProtKB/Swiss-Prot
  Hect, E3 ligase catalytic domain UniProtKB/Swiss-Prot
  Hect, E3 ligase catalytic domains UniProtKB/Swiss-Prot
InterPro E3B/C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HECT_dom UniProtKB/Swiss-Prot
  Hect_E3_ubiquitin_ligase UniProtKB/Swiss-Prot
  IQ_motif_EF-hand-BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:100763 UniProtKB/Swiss-Prot
MGD MGI:2140998 ENTREZGENE
NCBI Gene 100763 ENTREZGENE
PANTHER PTHR45700 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN-PROTEIN LIGASE E3C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HECT UniProtKB/Swiss-Prot
PhenoGen Ube3c PhenoGen
PROSITE HECT UniProtKB/Swiss-Prot
  PS50096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HECTc UniProtKB/Swiss-Prot
  SM00015 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56204 UniProtKB/Swiss-Prot
UniProt A0A0G2JDR9_MOUSE UniProtKB/TrEMBL
  Q0VB95 ENTREZGENE
  Q80U95 ENTREZGENE
  Q8BQZ6 ENTREZGENE
  Q8C7W6 ENTREZGENE
  Q8CDJ1 ENTREZGENE
  Q8VDL5 ENTREZGENE
  UBE3C_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q0VB95 UniProtKB/Swiss-Prot
  Q8BQZ6 UniProtKB/Swiss-Prot
  Q8C7W6 UniProtKB/Swiss-Prot
  Q8CDJ1 UniProtKB/Swiss-Prot
  Q8VDL5 UniProtKB/Swiss-Prot