Gatad1 (GATA zinc finger domain containing 1) - Rat Genome Database

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Gene: Gatad1 (GATA zinc finger domain containing 1) Mus musculus
Analyze
Symbol: Gatad1
Name: GATA zinc finger domain containing 1
RGD ID: 1558217
MGI Page MGI
Description: Predicted to enable sequence-specific DNA binding activity and zinc ion binding activity. Predicted to be involved in chromatin organization. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including eye; gonad; hemolymphoid system gland; liver; and lung. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 2B. Orthologous to human GATAD1 (GATA zinc finger domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310031E19Rik; 2810047M21Rik; 8430439A17Rik; 9130430G15Rik; B330017N08Rik; ENSMUSG00000073241; GATA zinc finger domain-containing protein 1; ocular development associated; ocular development-associated gene protein; Od; Odag
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3953,689,961 - 3,697,936 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl53,682,932 - 3,707,185 (-)EnsemblGRCm39 Ensembl
GRCm3853,639,961 - 3,647,936 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl53,632,932 - 3,657,185 (-)EnsemblGRCm38mm10GRCm38
MGSCv3753,639,961 - 3,647,936 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3653,645,975 - 3,653,923 (-)NCBIMGSCv36mm8
Celera53,575,509 - 3,583,484 (-)NCBICelera
Cytogenetic Map5A1NCBI
cM Map52.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12062807   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:16778019   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24952961  


Genomics

Comparative Map Data
Gatad1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3953,689,961 - 3,697,936 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl53,682,932 - 3,707,185 (-)EnsemblGRCm39 Ensembl
GRCm3853,639,961 - 3,647,936 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl53,632,932 - 3,657,185 (-)EnsemblGRCm38mm10GRCm38
MGSCv3753,639,961 - 3,647,936 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3653,645,975 - 3,653,923 (-)NCBIMGSCv36mm8
Celera53,575,509 - 3,583,484 (-)NCBICelera
Cytogenetic Map5A1NCBI
cM Map52.26NCBI
GATAD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38792,447,482 - 92,495,769 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl792,447,482 - 92,460,075 (+)EnsemblGRCh38hg38GRCh38
GRCh37792,076,796 - 92,089,389 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36791,914,701 - 91,926,678 (+)NCBINCBI36Build 36hg18NCBI36
Celera786,781,302 - 86,793,279 (+)NCBICelera
Cytogenetic Map7q21.2NCBI
HuRef786,685,108 - 86,697,727 (+)NCBIHuRef
CHM1_1792,006,801 - 92,019,417 (+)NCBICHM1_1
T2T-CHM13v2.0793,688,797 - 93,735,947 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2791,405,972 - 91,418,591 (+)NCBI
Gatad1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8431,462,251 - 31,473,827 (+)NCBIGRCr8
mRatBN7.2430,507,530 - 30,519,107 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl430,507,538 - 30,519,107 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx435,480,336 - 35,491,854 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0431,406,415 - 31,417,933 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0429,802,444 - 29,813,962 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0427,647,005 - 27,658,533 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl427,647,335 - 27,657,167 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0427,550,231 - 27,561,760 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4427,222,787 - 27,234,301 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera425,932,251 - 25,943,779 (+)NCBICelera
Cytogenetic Map4q13NCBI
Gatad1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554329,389,020 - 9,398,791 (+)NCBIChiLan1.0ChiLan1.0
GATAD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26110,330,330 - 110,381,182 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17158,596,248 - 158,643,211 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0784,445,039 - 84,456,781 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1798,031,816 - 98,085,290 (+)NCBIpanpan1.1PanPan1.1panPan2
GATAD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11418,043,857 - 18,054,340 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1418,043,671 - 18,052,979 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1417,604,933 - 17,615,422 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01417,850,606 - 17,861,100 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1417,850,425 - 17,859,772 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11418,011,333 - 18,021,802 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01417,723,542 - 17,734,026 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01417,997,377 - 18,007,867 (+)NCBIUU_Cfam_GSD_1.0
Gatad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511831,438,332 - 31,451,660 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049368031,348,238 - 1,361,566 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GATAD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl972,360,483 - 72,368,607 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1972,360,321 - 72,370,064 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2979,089,663 - 79,098,726 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GATAD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12156,564,766 - 56,574,634 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2156,565,360 - 56,574,161 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604247,705,806 - 47,715,542 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gatad1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624809735,399 - 746,723 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624809724,032 - 746,944 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1947
Count of miRNA genes:688
Interacting mature miRNAs:872
Transcripts:ENSMUST00000007559, ENSMUST00000119783, ENSMUST00000140871
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904958Gmmq8_mgastrocnemius muscle mass QTL 8 (mouse)5129421124Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
4141234Pbwg14_mpostnatal body weight growth 14 (mouse)Not determined5121273552Mouse
12738412Lfibq4_mliver fibrosis QTL 4 (mouse)5315000020799180Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301468Eye1_meye weight 1 (mouse)Not determined5121929650Mouse
10412081Bwq13_mbody weight QTL 13 (mouse)Not determined5123606323Mouse

Markers in Region
px-34e1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
Cytogenetic Map16C2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map5A2UniSTS
cM Map1354.0UniSTS
px-44c1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5A2UniSTS
Cytogenetic Map12A1.1UniSTS
px-9a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map12A1.1UniSTS
cM Map656.0UniSTS
cM Map1354.0UniSTS
Gatad1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5A2UniSTS
cM Map5 UniSTS
px-24g4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map3H2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map3F2.3UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map12B1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map9A1UniSTS
Cytogenetic Map17E2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map17CUniSTS
cM Map91.0UniSTS
cM Map316.4UniSTS
cM Map1740.0UniSTS
cM Map1354.0UniSTS
px-5f4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map5A2UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000007559   ⟹   ENSMUSP00000007559
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl53,689,961 - 3,697,934 (-)Ensembl
GRCm38.p6 Ensembl53,639,961 - 3,647,934 (-)Ensembl
Ensembl Acc Id: ENSMUST00000119783   ⟹   ENSMUSP00000113271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl53,693,077 - 3,697,806 (-)Ensembl
GRCm38.p6 Ensembl53,643,077 - 3,647,806 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140871   ⟹   ENSMUSP00000122092
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl53,682,932 - 3,691,539 (-)Ensembl
GRCm38.p6 Ensembl53,632,932 - 3,641,539 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196304   ⟹   ENSMUSP00000142480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl53,691,290 - 3,707,185 (-)Ensembl
GRCm38.p6 Ensembl53,641,290 - 3,657,185 (-)Ensembl
RefSeq Acc Id: NM_026033   ⟹   NP_080309
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3953,689,961 - 3,697,936 (-)NCBI
GRCm3853,639,961 - 3,647,936 (-)ENTREZGENE
MGSCv3753,639,961 - 3,647,936 (-)RGD
Celera53,575,509 - 3,583,484 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_080309   ⟸   NM_026033
- UniProtKB: Q8VCQ2 (UniProtKB/Swiss-Prot),   Q9CSG2 (UniProtKB/Swiss-Prot),   Q920S3 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000113271   ⟸   ENSMUST00000119783
Ensembl Acc Id: ENSMUSP00000007559   ⟸   ENSMUST00000007559
Ensembl Acc Id: ENSMUSP00000122092   ⟸   ENSMUST00000140871
Ensembl Acc Id: ENSMUSP00000142480   ⟸   ENSMUST00000196304

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q920S3-F1-model_v2 AlphaFold Q920S3 1-266 view protein structure

Promoters
RGD ID:6837561
Promoter ID:MM_KWN:41266
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000070782
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3653,641,746 - 3,642,246 (-)MPROMDB
RGD ID:6837560
Promoter ID:MM_KWN:41267
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell
Transcripts:NM_026033,   UC008WHI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3653,647,486 - 3,647,986 (-)MPROMDB
RGD ID:6885900
Promoter ID:EPDNEW_M6401
Type:initiation region
Name:Gatad1_1
Description:Mus musculus GATA zinc finger domain containing 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3853,647,947 - 3,648,007EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914460 AgrOrtholog
Ensembl Genes ENSMUSG00000007415 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000007559 ENTREZGENE
  ENSMUST00000007559.15 UniProtKB/Swiss-Prot
  ENSMUST00000119783.2 UniProtKB/Swiss-Prot
  ENSMUST00000140871.2 UniProtKB/TrEMBL
  ENSMUST00000196304.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.50.10 UniProtKB/Swiss-Prot
InterPro GATAD1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_GATA UniProtKB/Swiss-Prot
  Znf_NHR/GATA UniProtKB/Swiss-Prot
KEGG Report mmu:67210 UniProtKB/Swiss-Prot
MGD MGI:1914460 ENTREZGENE
NCBI Gene 67210 ENTREZGENE
PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gatad1 PhenoGen
PROSITE GATA_ZN_FINGER_2 UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
UniProt A0A0G2JDS4_MOUSE UniProtKB/TrEMBL
  F7CAN4_MOUSE UniProtKB/TrEMBL
  GATD1_MOUSE UniProtKB/Swiss-Prot
  Q3TS14_MOUSE UniProtKB/TrEMBL
  Q8VCQ2 ENTREZGENE
  Q920S3 ENTREZGENE
  Q9CSG2 ENTREZGENE
UniProt Secondary Q8VCQ2 UniProtKB/Swiss-Prot
  Q9CSG2 UniProtKB/Swiss-Prot