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Gene: Gatad1 (GATA zinc finger domain containing 1) Ictidomys tridecemlineatus

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Symbol:

Gatad1

Name:

GATA zinc finger domain containing 1

RGD ID:

12567154

Description:

ENCODES a protein that exhibits zinc ion binding (inferred); INVOLVED IN chromatin remodeling (ortholog); ASSOCIATED WITH dilated cardiomyopathy 2B (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

GATA zinc finger domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	31,438,332 - 31,451,660 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936803	1,348,238 - 1,361,566 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dilated cardiomyopathy 2B (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

Heimler syndrome 1 (ISO)

hypertrophic cardiomyopathy 2 (ISO)

infantile Refsum disease (ISO)

long QT syndrome (ISO)

microcephaly (ISO)

optic atrophy (ISO)

peroxisome biogenesis disorder 1A (ISO)

peroxisome biogenesis disorder 1B (ISO)

pleomorphic xanthoastrocytoma (ISO)

Zellweger Leukodystrophy (ISO)

Zellweger syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

chromatin remodeling (ISO)

Cellular Component

nucleoplasm (ISO)

nucleus (IEA)

Molecular Function

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Gatad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	31,438,332 - 31,451,660 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936803	1,348,238 - 1,361,566 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GATAD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	92,447,482 - 92,495,769 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	92,447,482 - 92,460,075 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	92,076,796 - 92,089,389 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	91,914,701 - 91,926,678 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	86,781,302 - 86,793,279 (+)	NCBI		Celera
Cytogenetic Map	7	q21.2	NCBI
HuRef	7	86,685,108 - 86,697,727 (+)	NCBI		HuRef
CHM1_1	7	92,006,801 - 92,019,417 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	93,688,797 - 93,735,947 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	91,405,972 - 91,418,591 (+)	NCBI

Gatad1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	3,689,961 - 3,697,936 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	3,682,932 - 3,707,185 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	3,639,961 - 3,647,936 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	3,632,932 - 3,657,185 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	3,639,961 - 3,647,936 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	3,645,975 - 3,653,923 (-)	NCBI		MGSCv36	mm8
Celera	5	3,575,509 - 3,583,484 (-)	NCBI		Celera
Cytogenetic Map	5	A1	NCBI
cM Map	5	2.26	NCBI

Gatad1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	31,462,251 - 31,473,827 (+)	NCBI		GRCr8
mRatBN7.2	4	30,507,530 - 30,519,107 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	30,507,538 - 30,519,107 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	35,480,336 - 35,491,854 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	31,406,415 - 31,417,933 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	29,802,444 - 29,813,962 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	27,647,005 - 27,658,533 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	27,647,335 - 27,657,167 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	27,550,231 - 27,561,760 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	27,222,787 - 27,234,301 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	25,932,251 - 25,943,779 (+)	NCBI		Celera
Cytogenetic Map	4	q13	NCBI

Gatad1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955432	9,389,020 - 9,398,791 (+)	NCBI	ChiLan1.0	ChiLan1.0

GATAD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	110,330,330 - 110,381,182 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	158,596,248 - 158,643,211 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	84,445,039 - 84,456,781 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	98,031,816 - 98,085,290 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

GATAD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	18,043,857 - 18,054,340 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	18,043,671 - 18,052,979 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	17,604,933 - 17,615,422 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	17,850,606 - 17,861,100 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	17,850,425 - 17,859,772 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	18,011,333 - 18,021,802 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	17,723,542 - 17,734,026 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	17,997,377 - 18,007,867 (+)	NCBI		UU_Cfam_GSD_1.0

GATAD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	72,360,483 - 72,368,607 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	72,360,321 - 72,370,064 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	79,089,663 - 79,098,726 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GATAD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	56,564,766 - 56,574,634 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	56,565,360 - 56,574,161 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	47,705,806 - 47,715,542 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gatad1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624809	735,399 - 746,723 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624809	724,032 - 746,944 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021720388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040290872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_040290872 ⟹ XP_040146806

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	31,438,332 - 31,451,660 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_040146806	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000029460.1
GenBank Protein	KAG3277583	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_040146806 ⟸ XM_040290872

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000033661	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000041033.1	UniProtKB/TrEMBL
InterPro	GATAD1	UniProtKB/TrEMBL
NCBI Gene	Gatad1	ENTREZGENE
PANTHER	GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR13340	UniProtKB/TrEMBL
UniProt	A0A287D7D8_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM