Parn (poly(A)-specific ribonuclease (deadenylation nuclease)) - Rat Genome Database

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Gene: Parn (poly(A)-specific ribonuclease (deadenylation nuclease)) Mus musculus
Analyze
Symbol: Parn
Name: poly(A)-specific ribonuclease (deadenylation nuclease)
RGD ID: 1558057
MGI Page MGI
Description: Predicted to enable several functions, including poly(A)-specific ribonuclease activity; protein kinase binding activity; and telomerase RNA binding activity. Acts upstream of or within nuclear-transcribed mRNA poly(A) tail shortening. Predicted to be located in nuclear speck and nucleolus. Predicted to be active in glutamatergic synapse; nucleus; and postsynapse. Is expressed in 2-cell stage embryo; central nervous system; and genitourinary system. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 6. Orthologous to human PARN (poly(A)-specific ribonuclease).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1200003I18Rik; D; DAN; poly(A)-specific ribonuclease PARN; polyadenylate-specific ribonuclease
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,355,828 - 13,486,035 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1613,355,824 - 13,486,034 (-)EnsemblGRCm39 Ensembl
GRCm381613,537,964 - 13,668,198 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1613,537,960 - 13,668,170 (-)EnsemblGRCm38mm10GRCm38
MGSCv371613,538,057 - 13,668,263 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361613,451,542 - 13,581,748 (-)NCBIMGSCv36mm8
Celera1614,141,614 - 14,273,156 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map169.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17785461   PMID:18287559   PMID:18337750   PMID:18641416   PMID:19217398   PMID:21873635   PMID:22727665   PMID:22956911   PMID:28671696   PMID:31273937   PMID:35778392   PMID:38355793  


Genomics

Comparative Map Data
Parn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,355,828 - 13,486,035 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1613,355,824 - 13,486,034 (-)EnsemblGRCm39 Ensembl
GRCm381613,537,964 - 13,668,198 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1613,537,960 - 13,668,170 (-)EnsemblGRCm38mm10GRCm38
MGSCv371613,538,057 - 13,668,263 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361613,451,542 - 13,581,748 (-)NCBIMGSCv36mm8
Celera1614,141,614 - 14,273,156 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map169.32NCBI
PARN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381614,435,701 - 14,630,260 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1614,435,700 - 14,632,728 (-)EnsemblGRCh38hg38GRCh38
GRCh371614,529,558 - 14,724,117 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361614,437,060 - 14,631,540 (-)NCBINCBI36Build 36hg18NCBI36
Build 341614,437,059 - 14,631,540NCBI
Celera1614,706,337 - 14,900,899 (-)NCBICelera
Cytogenetic Map16p13.12NCBI
HuRef1614,448,361 - 14,642,982 (-)NCBIHuRef
CHM1_11614,529,504 - 14,723,956 (-)NCBICHM1_1
T2T-CHM13v2.01614,473,312 - 14,667,845 (-)NCBIT2T-CHM13v2.0
Parn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8101,917,830 - 2,055,749 (-)NCBIGRCr8
mRatBN7.2101,410,636 - 1,548,573 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl101,410,642 - 1,548,560 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx106,108,223 - 6,245,254 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01034,320,569 - 34,457,608 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0101,425,524 - 1,562,262 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0101,309,724 - 1,461,123 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl101,308,414 - 1,461,269 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010204,485 - 358,376 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4101,788,754 - 1,925,032 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera10473,716 - 609,470 (-)NCBICelera
Cytogenetic Map10q11NCBI
Parn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554424,258,692 - 4,422,197 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554424,255,726 - 4,421,083 (+)NCBIChiLan1.0ChiLan1.0
PARN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21814,972,145 - 15,164,377 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11618,755,003 - 18,947,226 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01613,363,879 - 13,556,054 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11614,787,881 - 14,977,786 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1614,787,881 - 14,977,786 (-)Ensemblpanpan1.1panPan2
PARN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1628,629,137 - 28,783,671 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl628,629,174 - 28,783,901 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha629,992,537 - 30,147,919 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0628,792,691 - 28,948,127 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl628,792,731 - 28,947,297 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1628,595,636 - 28,750,791 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0628,483,721 - 28,639,090 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0628,891,075 - 29,046,446 (+)NCBIUU_Cfam_GSD_1.0
Parn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344114,569,040 - 114,714,225 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365012,666,874 - 2,810,488 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365012,666,908 - 2,810,159 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PARN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl328,612,269 - 28,802,504 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1328,616,808 - 28,802,506 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2329,618,701 - 29,877,403 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PARN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1513,891,362 - 14,089,576 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl513,891,369 - 14,089,518 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606815,963,884 - 16,163,050 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Parn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247823,919,965 - 4,093,743 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247823,920,042 - 4,092,179 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Parn
3426 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:467
Count of miRNA genes:314
Interacting mature miRNAs:371
Transcripts:ENSMUST00000058884
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1302106Rapop1_mradiation-induced apoptosis 1 (mouse)Not determined16378077915731053Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse

Markers in Region
UniSTS:237437  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381613,538,303 - 13,538,591UniSTSGRCm38
MGSCv371613,538,396 - 13,538,684UniSTSGRCm37
Celera1614,141,953 - 14,142,241UniSTS
Cytogenetic Map16B1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001358452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006522652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000058884   ⟹   ENSMUSP00000055969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1613,355,824 - 13,486,034 (-)Ensembl
GRCm38.p6 Ensembl1613,537,960 - 13,668,170 (-)Ensembl
Ensembl Acc Id: ENSMUST00000229042   ⟹   ENSMUSP00000155076
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1613,465,149 - 13,486,000 (-)Ensembl
GRCm38.p6 Ensembl1613,647,285 - 13,668,136 (-)Ensembl
Ensembl Acc Id: ENSMUST00000229251
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1613,483,774 - 13,485,846 (-)Ensembl
GRCm38.p6 Ensembl1613,665,910 - 13,667,982 (-)Ensembl
Ensembl Acc Id: ENSMUST00000229526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1613,469,242 - 13,486,013 (-)Ensembl
GRCm38.p6 Ensembl1613,651,378 - 13,668,149 (-)Ensembl
Ensembl Acc Id: ENSMUST00000231003   ⟹   ENSMUSP00000155335
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1613,358,422 - 13,486,002 (-)Ensembl
GRCm38.p6 Ensembl1613,540,558 - 13,668,138 (-)Ensembl
RefSeq Acc Id: NM_001358452   ⟹   NP_001345381
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391613,355,828 - 13,486,034 (-)NCBI
GRCm381613,537,964 - 13,668,170 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358453   ⟹   NP_001345382
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391613,355,828 - 13,486,034 (-)NCBI
GRCm381613,537,964 - 13,668,170 (-)NCBI
Sequence:
RefSeq Acc Id: NM_028761   ⟹   NP_083037
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391613,355,828 - 13,486,034 (-)NCBI
GRCm381613,537,964 - 13,668,170 (-)NCBI
MGSCv371613,538,057 - 13,668,263 (-)RGD
Celera1614,141,614 - 14,273,156 (-)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006522652   ⟹   XP_006522715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391613,355,834 - 13,485,844 (-)NCBI
GRCm381613,537,975 - 13,668,004 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317145   ⟹   XP_017172634
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391613,355,834 - 13,486,021 (-)NCBI
GRCm381613,537,975 - 13,668,198 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249305   ⟹   XP_030105165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391613,355,834 - 13,486,024 (-)NCBI
GRCm381613,537,975 - 13,668,198 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160156   ⟹   XP_036016049
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391613,355,834 - 13,486,035 (-)NCBI
Sequence:
RefSeq Acc Id: NP_083037   ⟸   NM_028761
- Peptide Label: isoform 1
- UniProtKB: A0A0R4J0P6 (UniProtKB/TrEMBL),   Q3TUQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006522715   ⟸   XM_006522652
- Peptide Label: isoform X1
- UniProtKB: Q3TUQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172634   ⟸   XM_017317145
- Peptide Label: isoform X2
- UniProtKB: Q3TUQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001345382   ⟸   NM_001358453
- Peptide Label: isoform 3
- UniProtKB: Q3TUQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001345381   ⟸   NM_001358452
- Peptide Label: isoform 2
- UniProtKB: Q3TUQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105165   ⟸   XM_030249305
- Peptide Label: isoform X1
- UniProtKB: Q3TUQ8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000155335   ⟸   ENSMUST00000231003
Ensembl Acc Id: ENSMUSP00000055969   ⟸   ENSMUST00000058884
Ensembl Acc Id: ENSMUSP00000155076   ⟸   ENSMUST00000229042
RefSeq Acc Id: XP_036016049   ⟸   XM_036160156
- Peptide Label: isoform X3
Protein Domains
R3H

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VDG3-F1-model_v2 AlphaFold Q8VDG3 1-624 view protein structure

Promoters
RGD ID:6827325
Promoter ID:MM_KWN:20166
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_028761,   UC007YGD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361613,668,096 - 13,668,937 (-)MPROMDB
RGD ID:8685492
Promoter ID:EPDNEW_M20777
Type:initiation region
Name:Parn_1
Description:Mus musculus poly-specific ribonuclease , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381613,668,155 - 13,668,215EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921358 AgrOrtholog
Ensembl Genes ENSMUSG00000022685 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000058884 ENTREZGENE
  ENSMUST00000058884.10 UniProtKB/TrEMBL
  ENSMUST00000229042.2 UniProtKB/TrEMBL
  ENSMUST00000231003.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.50 UniProtKB/TrEMBL
  3.30.420.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CAF1_poly(A)_ribonucleases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PARN_R3H UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PolyA-riboNase_RNA-binding UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  R3H_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  R3H_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNase_CAF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74108 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1921358 ENTREZGENE
NCBI Gene 74108 ENTREZGENE
PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLY(A)-SPECIFIC RIBONUCLEASE PARN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CAF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  R3H UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Parn PhenoGen
PROSITE R3H UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53098 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF82708 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J0P6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8VHG7_MOUSE UniProtKB/TrEMBL
  A0A2R8VKA3_MOUSE UniProtKB/TrEMBL
  PARN_MOUSE UniProtKB/Swiss-Prot
  Q3TUQ8 ENTREZGENE, UniProtKB/TrEMBL
  Q8VDG3 ENTREZGENE
UniProt Secondary Q8C7N6 UniProtKB/Swiss-Prot
  Q9DC46 UniProtKB/Swiss-Prot