LOC127896023 (H3K4me1 hESC enhancer GRCh37_chr22:36682442-36682954) - Rat Genome Database

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Gene: LOC127896023 (H3K4me1 hESC enhancer GRCh37_chr22:36682442-36682954) Homo sapiens
Analyze
Symbol: LOC127896023
Name: H3K4me1 hESC enhancer GRCh37_chr22:36682442-36682954
RGD ID: 155775154
Description: This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
Type: biological-region
RefSeq Status: REVIEWED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,286,396 - 36,286,908 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372236,682,442 - 36,682,954 (+)NCBIGRCh37GRCh37hg19GRCh37
T2T-CHM13v2.02236,746,546 - 36,747,058 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30033119  


Genomics

Variants

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Variants in LOC127896023
35 total Variants

QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581529BP71_HBlood pressure QTL 71 (human)20.001Blood pressurepulse pressure221109496637094966Human
2289428BW313_HBody weight QTL 313 (human)2.090.0015Body weightBMI221134428437344284Human
406907160GWAS556136_Hcognitive decline measurement, memory performance, language measurement QTL GWAS556136 (human)0.0000005cognitive behavior trait (VT:0010450)223628666136286662Human
407319198GWAS968174_HHbA1c measurement QTL GWAS968174 (human)4e-13HbA1c measurementblood hemoglobin A1c level (CMO:0002786)223628675336286754Human
407233370GWAS882346_HHbA1c measurement QTL GWAS882346 (human)8e-12HbA1c measurementblood hemoglobin A1c level (CMO:0002786)223628675336286754Human


Expression

RNA-SEQ Expression


Sequence



Additional Information

Database Acc Id Source(s)
COSMIC LOC127896023 COSMIC
GTEx LOC127896023 GTEx
Human Proteome Map LOC127896023 Human Proteome Map
NCBI Gene LOC127896023 ENTREZGENE