LOC127829519 (NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:51201215-51201956) - Rat Genome Database

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Gene: LOC127829519 (NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:51201215-51201956) Homo sapiens
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Symbol: LOC127829519
Name: NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:51201215-51201956
RGD ID: 155774547
Description: This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer associates with the NANOG transcription factor and is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Nov 2022]
Type: biological-region
RefSeq Status: REVIEWED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381550,909,018 - 50,909,759 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371551,201,215 - 51,201,956 (+)NCBIGRCh37GRCh37hg19GRCh37
T2T-CHM13v2.01548,716,288 - 48,717,029 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30033119  


Genomics

Variants

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Variants in LOC127829519
3 total Variants

QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Expression

RNA-SEQ Expression


Sequence



Additional Information

Database Acc Id Source(s)
COSMIC LOC127829519 COSMIC
GTEx LOC127829519 GTEx
Human Proteome Map LOC127829519 Human Proteome Map
NCBI Gene LOC127829519 ENTREZGENE