LOC127829576 (NANOG-H3K27ac hESC enhancer GRCh37_chr15:57490067-57490736) - Rat Genome Database

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Gene: LOC127829576 (NANOG-H3K27ac hESC enhancer GRCh37_chr15:57490067-57490736) Homo sapiens
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Symbol: LOC127829576
Name: NANOG-H3K27ac hESC enhancer GRCh37_chr15:57490067-57490736
RGD ID: 155774026
Description: This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the NANOG transcription factor and is marked by the H3K27ac histone modification. [provided by RefSeq, Nov 2022]
Type: biological-region
RefSeq Status: REVIEWED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381557,197,869 - 57,198,538 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371557,490,067 - 57,490,736 (+)NCBIGRCh37GRCh37hg19GRCh37
T2T-CHM13v2.01555,001,135 - 55,001,804 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:30033119  



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Variants in LOC127829576
2 total Variants

The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
RefSeq Transcripts NG_131058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC090532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
COSMIC LOC127829576 COSMIC
GTEx LOC127829576 GTEx
Human Proteome Map LOC127829576 Human Proteome Map
NCBI Gene LOC127829576 ENTREZGENE