LOC127829455 (H3K4me1 hESC enhancer GRCh37_chr15:45404607-45405142) - Rat Genome Database

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Gene: LOC127829455 (H3K4me1 hESC enhancer GRCh37_chr15:45404607-45405142) Homo sapiens
Analyze
Symbol: LOC127829455
Name: H3K4me1 hESC enhancer GRCh37_chr15:45404607-45405142
RGD ID: 155757193
Description: This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
Type: biological-region
RefSeq Status: REVIEWED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381545,112,409 - 45,112,944 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371545,404,607 - 45,405,142 (+)NCBIGRCh37GRCh37hg19GRCh37
T2T-CHM13v2.01542,920,430 - 42,920,965 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30033119  


Genomics

Variants

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Variants in LOC127829455
91 total Variants

QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Expression

RNA-SEQ Expression


Sequence



Additional Information

Database Acc Id Source(s)
COSMIC LOC127829455 COSMIC
GTEx LOC127829455 GTEx
Human Proteome Map LOC127829455 Human Proteome Map
NCBI Gene LOC127829455 ENTREZGENE