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Gene: Cbln3 (cerebellin 3 precursor protein) Mus musculus

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Symbol:

Cbln3

Name:

cerebellin 3 precursor protein

RGD ID:

1557277

MGI Page

MGI

Description:

Predicted to be involved in maintenance of synapse structure. Located in extracellular space and synapse. Is active in parallel fiber to Purkinje cell synapse and synaptic cleft. Is expressed in several structures, including brain; genitourinary system; gut; respiratory system; and sensory organ. Orthologous to human CBLN3 (cerebellin 3 precursor).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cerebellin-3; precerebellin 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CBLN3 (cerebellin 3 precursor)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Cbln3 (cerebellin 3 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cbln3 (cerebellin 3 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CBLN3 (cerebellin 3 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CBLN3 (cerebellin 3 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cbln3 (cerebellin 3 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CBLN3 (cerebellin 3 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CBLN3 (cerebellin 3 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cbln3 (cerebellin 3 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CBLN3 (cerebellin 3 precursor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Cbln3 (cerebellin 3 precursor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkeyp-110c7.4	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Danio rerio (zebrafish):	si:dkeyp-74b6.2	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Danio rerio (zebrafish):	cbln12 (cerebellin 12)	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Danio rerio (zebrafish):	cbln20 (cerebellin 20)	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Danio rerio (zebrafish):	cbln18 (cerebellin 18)	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	56,116,377 - 56,121,713 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	56,116,370 - 56,121,849 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	55,878,920 - 55,884,256 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	55,878,913 - 55,884,392 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	56,497,757 - 56,503,093 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	54,832,991 - 54,838,327 (-)	NCBI		MGSCv36	mm8
Celera	14	53,682,705 - 53,688,041 (-)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	28.19	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cbln3	Mouse	Brain-Lung-Thyroid Syndrome		ISO	CBLN3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Brain-lung-thyroid syndrome	ClinVar	PMID:25741868
Cbln3	Mouse	lysinuric protein intolerance		ISO	CBLN3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Lysinuric protein intolerance	ClinVar	PMID:28492532
Cbln3	Mouse	Specific Granule Deficiency		ISO	CBLN3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Specific granule deficiency	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cbln3	Mouse	(+)-schisandrin B	multiple interactions	ISO	Cbln3 (Rattus norvegicus)	6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of CBLN3 mRNA]	CTD	PMID:31150632
Cbln3	Mouse	1,2-dichloroethane	decreases expression	EXP		6480464	ethylene dichloride results in decreased expression of CBLN3 mRNA	CTD	PMID:28960355
Cbln3	Mouse	1-naphthyl isothiocyanate	decreases expression	ISO	Cbln3 (Rattus norvegicus)	6480464	1-Naphthylisothiocyanate results in decreased expression of CBLN3 mRNA	CTD	PMID:30723492
Cbln3	Mouse	17beta-estradiol	decreases expression	ISO	CBLN3 (Homo sapiens)	6480464	Estradiol results in decreased expression of CBLN3 mRNA	CTD	PMID:31614463
Cbln3	Mouse	6-propyl-2-thiouracil	decreases expression	ISO	Cbln3 (Rattus norvegicus)	6480464	Propylthiouracil results in decreased expression of CBLN3 mRNA	CTD	PMID:24780913
Cbln3	Mouse	acetamide	decreases expression	ISO	Cbln3 (Rattus norvegicus)	6480464	acetamide results in decreased expression of CBLN3 mRNA	CTD	PMID:31881176
Cbln3	Mouse	acrylamide	decreases expression	ISO	Cbln3 (Rattus norvegicus)	6480464	Acrylamide results in decreased expression of CBLN3 mRNA	CTD	PMID:28959563
Cbln3	Mouse	aflatoxin B1	decreases methylation	ISO	CBLN3 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of CBLN3 gene	CTD	PMID:27153756
Cbln3	Mouse	arsenite(3-)	increases expression	EXP		6480464	arsenite results in increased expression of CBLN3 mRNA	CTD	PMID:33053406
Cbln3	Mouse	benzo[a]pyrene	decreases expression	EXP		6480464	Benzo(a)pyrene results in decreased expression of CBLN3 mRNA	CTD	PMID:19770486
Cbln3	Mouse	bisphenol A	decreases expression	ISO	Cbln3 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of CBLN3 mRNA	CTD	PMID:25181051 and PMID:34947998
Cbln3	Mouse	bisphenol A	increases expression	ISO	Cbln3 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of CBLN3 mRNA	CTD	PMID:30816183
Cbln3	Mouse	bisphenol A	decreases expression	ISO	CBLN3 (Homo sapiens)	6480464	bisphenol A results in decreased expression of CBLN3 mRNA	CTD	PMID:27685785
Cbln3	Mouse	butanal	decreases expression	ISO	CBLN3 (Homo sapiens)	6480464	butyraldehyde results in decreased expression of CBLN3 mRNA	CTD	PMID:26079696
Cbln3	Mouse	chlorpyrifos	increases expression	EXP		6480464	Chlorpyrifos results in increased expression of CBLN3 mRNA	CTD	PMID:37019170
Cbln3	Mouse	dicrotophos	increases expression	ISO	CBLN3 (Homo sapiens)	6480464	dicrotophos results in increased expression of CBLN3 mRNA	CTD	PMID:28302478
Cbln3	Mouse	endosulfan	decreases expression	ISO	Cbln3 (Rattus norvegicus)	6480464	Endosulfan results in decreased expression of CBLN3 mRNA	CTD	PMID:29391264
Cbln3	Mouse	folic acid	decreases expression	ISO	CBLN3 (Homo sapiens)	6480464	Folic Acid results in decreased expression of CBLN3 mRNA	CTD	PMID:21867686
Cbln3	Mouse	furan	increases methylation	ISO	Cbln3 (Rattus norvegicus)	6480464	furan results in increased methylation of CBLN3 gene	CTD	PMID:22079235
Cbln3	Mouse	furan	decreases expression	ISO	Cbln3 (Rattus norvegicus)	6480464	furan results in decreased expression of CBLN3 mRNA	CTD	PMID:26194646
Cbln3	Mouse	hydrogen sulfide	increases expression	EXP		6480464	Hydrogen Sulfide results in increased expression of CBLN3 mRNA	CTD	PMID:31843631
Cbln3	Mouse	lead(0)	decreases expression	ISO	CBLN3 (Homo sapiens)	6480464	Lead results in decreased expression of CBLN3 mRNA	CTD	PMID:19921347
Cbln3	Mouse	paracetamol	decreases expression	ISO	CBLN3 (Homo sapiens)	6480464	Acetaminophen results in decreased expression of CBLN3 mRNA	CTD	PMID:29067470
Cbln3	Mouse	paracetamol	increases expression	ISO	Cbln3 (Rattus norvegicus)	6480464	Acetaminophen results in increased expression of CBLN3 mRNA	CTD	PMID:30723492
Cbln3	Mouse	rotenone	affects expression	ISO	Cbln3 (Rattus norvegicus)	6480464	Rotenone affects the expression of CBLN3 mRNA	CTD	PMID:28374803
Cbln3	Mouse	sunitinib	increases expression	ISO	CBLN3 (Homo sapiens)	6480464	Sunitinib results in increased expression of CBLN3 mRNA	CTD	PMID:31533062
Cbln3	Mouse	tetrachloromethane	decreases expression	ISO	Cbln3 (Rattus norvegicus)	6480464	Carbon Tetrachloride results in decreased expression of CBLN3 mRNA	CTD	PMID:31150632
Cbln3	Mouse	tetrachloromethane	multiple interactions	ISO	Cbln3 (Rattus norvegicus)	6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of CBLN3 mRNA]	CTD	PMID:31150632
Cbln3	Mouse	thioacetamide	decreases expression	ISO	Cbln3 (Rattus norvegicus)	6480464	Thioacetamide results in decreased expression of CBLN3 mRNA	CTD	PMID:23411599
Cbln3	Mouse	triptonide	increases expression	EXP		6480464	triptonide results in increased expression of CBLN3 mRNA	CTD	PMID:33045310

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cbln3	Mouse	maintenance of synapse structure	involved_in	IBA	PANTHER:PTN002740918 and MGI:88282	2290270		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cbln3	Mouse	endoplasmic reticulum	located_in	IEA	UniProtKB-SubCell:SL-0095	2290270		UniProt	GO_REF:0000044
Cbln3	Mouse	extracellular space	located_in	IDA		2290270	PMID:17030622	MGI	PMID:17030622
Cbln3	Mouse	extracellular space	located_in	IGI	MGI:88281	2290270	PMID:17331201	MGI	PMID:17331201
Cbln3	Mouse	Golgi apparatus	located_in	IEA	UniProtKB-SubCell:SL-0132	2290270		UniProt	GO_REF:0000044
Cbln3	Mouse	parallel fiber to Purkinje cell synapse	is_active_in	IDA		2290270	PMID:17331201	SynGO	PMID:17331201
Cbln3	Mouse	synapse	is_active_in	IBA	PANTHER:PTN002740918 more ...	2290270		GO_Central	GO_REF:0000033
Cbln3	Mouse	synapse	located_in	IDA		2290270	PMID:17331201	MGI	PMID:17331201
Cbln3	Mouse	synaptic cleft	is_active_in	IDA		2290270	PMID:17331201	SynGO	PMID:17331201

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cbln3	Mouse	protein binding	enables	IPI	PR:Q8BGU2 more ...	2290270	PMID:17331201	MGI	PMID:17331201
Cbln3	Mouse	protein binding	enables	IPI	PR:Q9R171	2290270	PMID:10964938 and PMID:17030622	MGI	PMID:10964938 and PMID:17030622

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cbln3	Mouse	abnormal auditory brainstem response		IEA		5509061		MGI
Cbln3	Mouse	abnormal cerebellar granule layer morphology		IAGP		5509061		MGI	PMID:17030622
Cbln3	Mouse	abnormal gait		IAGP		5509061		MGI	PMID:17030622
Cbln3	Mouse	abnormal motor capabilities/coordination/movement		IAGP		5509061		MGI	PMID:17030622
Cbln3	Mouse	abnormal nervous system morphology		IAGP		5509061		MGI	PMID:17030622
Cbln3	Mouse	abnormal Purkinje cell innervation		IAGP		5509061		MGI	PMID:17030622
Cbln3	Mouse	abnormal sleep behavior		IEA		5509061		MGI
Cbln3	Mouse	ataxia		IAGP		5509061		MGI	PMID:17030622
Cbln3	Mouse	impaired coordination		IAGP		5509061		MGI	PMID:17030622
Cbln3	Mouse	no abnormal phenotype detected		IAGP		5509061		MGI	PMID:17030622

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:10349636	PMID:10964938	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12477932	PMID:15489334	PMID:16141072	PMID:16141073	PMID:16602821	PMID:16930405
PMID:17030622	PMID:17331201	PMID:18799693	PMID:19250438	PMID:20562862	PMID:20856818	PMID:21873635	PMID:24194600	PMID:24952961	PMID:27626380	PMID:32325033	PMID:36823038
PMID:38355793

Cbln3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	56,116,377 - 56,121,713 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	56,116,370 - 56,121,849 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	55,878,920 - 55,884,256 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	55,878,913 - 55,884,392 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	56,497,757 - 56,503,093 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	54,832,991 - 54,838,327 (-)	NCBI		MGSCv36	mm8
Celera	14	53,682,705 - 53,688,041 (-)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	28.19	NCBI

CBLN3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	24,426,545 - 24,429,668 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	24,426,545 - 24,430,954 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	24,895,751 - 24,898,874 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	23,965,578 - 23,968,571 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	14	4,760,374 - 4,763,367 (-)	NCBI		Celera
Cytogenetic Map	14	q12	NCBI
HuRef	14	5,010,393 - 5,013,386 (-)	NCBI		HuRef
CHM1_1	14	24,894,311 - 24,897,304 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	18,625,275 - 18,628,398 (-)	NCBI		T2T-CHM13v2.0

Cbln3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	33,331,919 - 33,334,428 (-)	NCBI		GRCr8
mRatBN7.2	15	29,362,014 - 29,364,523 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	29,362,302 - 29,364,612 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	31,207,673 - 31,210,182 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	32,354,887 - 32,357,396 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	30,597,244 - 30,599,753 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	34,548,102 - 34,550,938 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	34,548,295 - 34,550,860 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	38,436,404 - 38,439,238 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	34,026,962 - 34,029,272 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	15	28,936,004 - 28,938,314 (-)	NCBI		Celera
Cytogenetic Map	15	p13	NCBI

Cbln3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	35,881,075 - 35,882,268 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	35,880,337 - 35,882,485 (+)	NCBI	ChiLan1.0	ChiLan1.0

CBLN3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	25,781,479 - 25,785,712 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	24,998,021 - 25,000,511 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	5,200,297 - 5,206,018 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	23,326,146 - 23,329,604 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

CBLN3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	4,399,188 - 4,402,478 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	4,400,462 - 4,401,754 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	4,320,877 - 4,324,167 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	4,510,821 - 4,514,111 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	4,510,312 - 4,513,550 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	4,200,177 - 4,203,462 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	4,262,864 - 4,266,152 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	4,525,056 - 4,528,344 (-)	NCBI		UU_Cfam_GSD_1.0

Cbln3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	36,258,571 - 36,264,046 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936722	125,758 - 127,063 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936722	125,758 - 127,002 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CBLN3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	74,864,114 - 74,868,445 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	74,865,931 - 74,868,443 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	80,136,834 - 80,139,346 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CBLN3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	1,409,147 - 1,412,140 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	1,410,406 - 1,411,667 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666036	13,095,412 - 13,098,662 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cbln3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624820	8,085,705 - 8,087,053 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624820	8,084,910 - 8,090,580 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Cbln3
214 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	2278
Count of miRNA genes:	733
Interacting mature miRNAs:	970
Transcripts:	ENSMUST00000063871, ENSMUST00000172378
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20887473	121269804	Mouse
1300625	Cosz2_m	cocaine seizure 2 (mouse)			Not determined		14	35045797	68785736	Mouse
1301777	Bglq15_m	body growth late QTL 15 (mouse)			Not determined		14	42962416	76962593	Mouse
1301489	Lbm10_m	lean body mass 10 (mouse)			Not determined		14	53761296	87761529	Mouse
1357527	Epfpq1_m	epididymal fat percentage QTL 1 (mouse)			Not determined		14	21062450	71885801	Mouse
1301424	Skull21_m	skull morphology 21 (mouse)			Not determined		14	42962416	76962593	Mouse
4142364	Pbwg18_m	postnatal body weight growth 18 (mouse)			Not determined		14	52281984	86282125	Mouse
4141400	Nilac8_m	nicotine induced locomotor activity 8 (mouse)			Not determined		14	43065847	77066045	Mouse
10043889	Cia52_m	collagen induced arthritis QTL 52 (mouse)			Not determined		14	56082381	90082509	Mouse
27226774	Tibl15_m	tibia length 15, 10 week (mouse)					14	30321957	87937436	Mouse
4142485	Modor2_m	modifier of ocular retardation 2 (mouse)			Not determined		14	24926248	58179769	Mouse
4142419	Tgq26_m	triglyceride QTL 26 (mouse)			Not determined			40337319	74337319	Mouse
27226737	Metcl12_m	metatarsal-calcaneal length 12, 10 week (mouse)					14	33221957	59437449	Mouse
1300605	El5_m	epilepsy 5 (mouse)			Not determined		14	49455425	83455556	Mouse
1301091	Bbaa21_m	B.burgdorferi-associated arthritis 21 (mouse)			Not determined		14	43065847	77066045	Mouse
4141484	Hcbip1_m	hexachlorobenzene induced porphyria 1 (mouse)			Not determined			47335250	59962593	Mouse
12880432	Fgf23lq3_m	FGF23 serum level QTL 3 (mouse)					14	53937440	87937440	Mouse
1300998	Cia17_m	collagen induced arthritis 17 (mouse)			Not determined		14	30335250	64335381	Mouse
10043887	Cia50_m	collagen induced arthritis QTL 50 (mouse)			Not determined		14	37430185	71430320	Mouse
1300805	Mors3_m	modifier of obesity related sterility 3 (mouse)			Not determined		14	43037270	77037418	Mouse
10043886	Cia49_m	collagen induced arthritis QTL 49 (mouse)			Not determined		14	29996994	63997133	Mouse
14746973	Manh76_m	mandible shape 76 (mouse)					14	22287217	56287217	Mouse
1300909	Ath13_m	atherosclerosis 13 (mouse)			Not determined		14	30335250	64335381	Mouse
13506929	Recrq10_m	recombination rate in male meiosis QTL 10 (mouse)					14	27921957	61137449	Mouse

Cbln3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	14	55,882,800 - 55,882,992	UniSTS	GRCm38
MGSCv37	14	56,501,637 - 56,501,829	UniSTS	GRCm37
Celera	14	53,686,585 - 53,686,777	UniSTS
Cytogenetic Map	14	C3	UniSTS
cM Map	14	22.5	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_019820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF218379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF218380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK081085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC065108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000063871 ⟹ ENSMUSP00000070494

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	56,116,370 - 56,121,849 (-)	Ensembl
GRCm38.p6 Ensembl	14	55,878,913 - 55,884,392 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000172378 ⟹ ENSMUSP00000127798

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	56,119,518 - 56,121,689 (-)	Ensembl
GRCm38.p6 Ensembl	14	55,882,061 - 55,884,232 (-)	Ensembl

RefSeq Acc Id:

NM_019820 ⟹ NP_062794

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	56,116,377 - 56,121,713 (-)	NCBI
GRCm38	14	55,878,920 - 55,884,256 (-)	ENTREZGENE
MGSCv37	14	56,497,757 - 56,503,093 (-)	RGD
Celera	14	53,682,705 - 53,688,041 (-)	RGD
cM Map	14		ENTREZGENE

Sequence:

show sequence

AGCAGAGGGGGGAGAGCCAAGGGGACAGAAGACAGGAAAATCTGTGAGTTACAGAGGCACCTAGCAAGGATGGGGACGGAATGGCACAAACCCAAGCTGTCCTTGGCCCTGGTGCTTCTGACCCTGGA
GGCTGGGTGGGCTCAAGAAGGGTCAGAGCCTGTCCTACTGGAGGGGGAGTGCCTGGTGGTCTGTGAGCCAGGCCGACCTACTGCAGGAGGACCTGGGGGTGCAGCCCTGGGAGAGGCACCCCCAGGAC
GAGTGGCGTTTGCTGCAGTCCGAAGCCATCACCATGAACCAGCAGGAGAAACCGGCAACGGTACCAGTGGTGCCATCTACTTCGACCAGGTACTGGTCAATGAGGGCGAGGGCTTTGATCGGACCTCG
GGCTGCTTCGTGGCCCCTGTCCGTGGAGTCTACAGCTTCCGATTCCACGTGGTCAAGGTGTACAACCGCCAAACTGTCCAGGTGAGTCTGATGCTGAACACATGGCCGGTCATCTCAGCCTTTGCAAA
TGACCCTGATGTGACCCGAGAGGCAGCCACAAGCTCTGTGCTGCTTCCCCTGGACCCGGGGGACCGTGTGTCCCTGCGCCTGCGTCGGGGGAATCTTCTGGGTGGCTGGAAGTATTCGAGCTTCTCAG
GCTTCCTCATCTTCCCACTCTGAGGACCCAAGCCTTTAAACGGAGATGTCTAGCATCTTTCTGCCCTTCCCTGCCCCAGAAACAAAGTATCTTTGGAGCAAGAGAAAGGCCCCCTCCAGGCTGCCTAC
GGCCCACCTCCTTGCATGAGATCATAGTTAAACACCCAAGGCTAGGAGCAGAGCAGAGCTACGGAACCTCTAGACAAAACGCCTCACTCAGGTCGCCCTCCCAGTCTCCTGCTGCCCCTCCTGCCCCT
CCGCAGCTCCAGTTTAAGGCAGGGTTTGCTAAGAGGGAAGCTTGCACTTCTTCACAGACTCCACTCCTCCTGTTCTCCACCCCAGCTTCCTGCTCAGCGCTATTTGGTGACAGGTGGCGCAGGTAAGC
TTGACAGGCTCCCACAGGGGCCCAGATGGACCAGCCTCATAGTACCTGCGGGCTCCATCCTGTGAGGAATGCCAGCAATGAGAGCTCTCGGCCAGCACCCTGTGAACAGGGCTGACAGCTCAACCACA
AAAAAGCAGTGTGGGGAAGGCCACAGAGCATCCGTAGCTGGAGAGACAGGATGGGGCCATGTGCCTACCCTGAACATGTAAACATTCTGCAGGTAAACTGGGACAGTCAGAAGGCAGGAATCCTGCCG
TCCATCTGTGCCAGGTCCCAATGGACTCTGGCCCTCATTGCCTGACCAGAGGCTTGGGTGTGTGTGTGTGTGTGTTTGCTCTGGCTAATAGGGGAAACTAGAGCAGGTATACAGACCTGGAGGCAGAG
TCAAAGGTCACGAATGAGTCATCAGTAACCACATGTCCTCTCCCTCAGCCACCTCCTAGAACTGCCCCACCTTGGAAATCTGAATTTCAGTCACTCCCTACTCTTGATCGACATGTAGTTCCTCCAGC
TGTCTCCCAGCTAATTTCCCTGTAGTCTGCTCCCCCCCCCAAACGCATCGTTCTTCCTCTACTTCTACTACTGTCTTACTCTTCTTTTAAGGTCTCCTGTTACCTGGGAGTCCATGACTCATCTCCCC
CAACTAGTATCCCACCAACATCAGAAACTCTTTTTACCCAGTTGTCCCAATGGTCCAGCATGAACGGACCTACCTAGAACAACTGGGGAGCTGCGGCTGTTAAAACAGTGACTTGTCCTGTTCGTGAG
GGTGTGAAACAGGGACTGCAGGACTACAGCATGCTGAAGAGAAATAAATTCAAAGCTGGGCATAGCAGTCAACGTTTTTAAAGTGCTATAATATAAAGTACTCGTGCTAAATAAATACCAGGGCAAGT
TTGTGGTTTTTTGTTTTGGTTTGGTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAAGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGC
CTCCTGAGTGCTGGGATTAAAGGCGTGTGCCACCACACCCGGCAAGTTTATGGTTTTAAAATAAAAATCTAGGTGTTCATTCAGGAGACAGAGGCAGGTGGATCTCTGTGAGTTTCAGGCAAGCCATA
GTAAAACCTGTCCAAAAGAAAGACAGAGAGACAGAGACAGAACAAAGAAAGAAATAAGGATGGAGGTGTCACTCAGAGGCAGACGCTAATACGCATGAAGCACTGGGTTTGAACCCCAGCACTGGGGT
AGGCGGGTAGGGAGTAGACAAGAGGGGGAGGGGCAGCACTTTCCTTCAGCATTTGTCCTTACTTTGTGGCCAGGAAGAATAGTTTAAACAAGATAAGATAATATTTCTGTCTCACATGGAAGAGTCTG
CAGCTGGGGAGTTCAGGATAAACAGCTGCTTAGAACCACAGAGCCCAGTCTTCCCTTTTGGGATGCCTCTCTGGCATGCCGCCTCATGGCCCAAGATGGCTTCGTGCAGGTCAGCATTACATCCCAGC
AGCGCTGGAAAAAGGGAGAGAAGAAAGAACACAGCTCCTTCCTTGAAAGGTTTTCCGACCGCTGACAGCTGCCTACACACATTTCTGATTGCATCTCATCGCCAGAATGGAGTCACACTTGGCCACAC
CAAGCCAGGACAGGCAAGGAAACAATCTCACAATCTTACCTTTTTGTCATATTTTCCATGTGCATGCACCTGGGACGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGGGG
GGACAACTTTGGGTGTTGGACCCCACCTCCCACTATGTTTGAGACAGGGACTCTAATTTTTCATTGCGTACACCAGGCTAGCTGGAACCTTCTGGAATTCTGCCTTCTCCTTAAAGTACAGGATTACA
AATGCATGGACTATGGCTGGCTGGAATATGAACTCAGGCCAACAGGTGTGCACAGCAAGTGTTCTAACCACTGGACCACCTCCAAAGCCCGTAGACTTTATTCCAGGCCATCACATCCAAAATCAGGA
TCTTATAGTAAGGAAGAAGAGTAATTGGACATTGGAAGTTTTTCAGAATACAATAAACTAGATCAGCCCGTTAACACCGGGAGGTACACGATGCTCTTTATTTATTTATTGCACCTTCTATATGTCAA
CAGTCTGGAAAAGCGTGACTATTCTCTGATAAAGTTTCACAACGCTGAAAATAAGGTGGCAGGTGGTACCCTTCCTTCCCAGAAGGAAAGAGAGAAGAAGACACTTCCAAATTCATTTAGTGCTCAAT
CCCTTAGAGCTGTAGTGCTGATATCCTCAGGAGCTTCTGTTTTCCAGCTAAAACACACACAGCACAGCCCCGCCCTCTGACTGGCTCCAGCCTAAACCTGCCACATCTTTCTGATGTCCATAGGAAAA
GTTCCTGTAGGTTGAAAATTCGATGCTTAGACTGGACCCACCGAGAATATACAGAGCAATCTTTCTATTTTAAGGTCCCCACCAGCAGTGTATTTGCAAAGTCCCCATGCCATGTAAACGCATATTGA
GATATCTTGGTGATTAGAGTATAGACTCTGAGATATCTGCATAGCACAGACTTAAAATCTCAAGATGATGTTTTGAGAAAACACTTGGCACAATTCACCCACTGAGATACTCAAGACAAAGAAGATCA
ACATAGGCTTTGGTTTTGGTTTGTTTTACTTTTTAGTTTATTTTTATTTTATAGTGTTTTGCCTGTGCACCACATACATGCAGTTCCCTTGGAGGCCAGAGGGGGTGCCTCAGATCCCTTGAGACTGA
ACTGCAGTGGCAGTGAGCCACCTTATGGATGCTGAGAGTGTAAGCTGGATCCTCTACAAGAGCAGCCAGAGCTCTTATCCATTACTCCATCTCTCCAGCTCGCTCCTCCACTCACACACACTCTGGTT
TTAATCATTTTAGAAGGTAAATCAGTTCCTACCCAAACAAGAATTCATTGGTTGATAGTCCAAGACTTCCTTGCCATGAAGAAAATGCCCCTCTTTTCTTTTGACCCAGAAACAGATGTCTTGTCTTT
AGGCCACATAGCCGTGTGGCCCTCTTTTTTACATTTGAAGACCAAATCCAAACTTGGTCTGAGTGAGATAGTATCCACTTCATAACTACAAATTCATTTGTATGATAGTGAGAGTGGAGGTTTAAAAT
TGGACAATGGATGTCCCATACCTTTAATCCCAGCCCTCGGGAGACAGAGGCAGGTGGTTATCTGTGAGTTCAAGGCTAGCCTGCTCTGTAGAGTGAGTTCCAGGATAGCCAGGGCTTGTCTTGACACA
AAATAAAACTGAGCAATCCAGCCTAGTGTGATGGTACACACCTGTAAACTTGGCACTTAAAAGACAGAAGCAGGAAGATCTGGAGTTGAAGGCTAGCCTGGGCTACATAAACTCTGTCACACATACAC
ACACAAAACTTGTATAATGCTGTAGTGATGTGTTTGCTTTATCAAAATGCTCAAAGCTTTTAAAAGTGCTGACCTATTAGACTTGCAATTCCATTTAAATGTTCAGGAGAATTTAATTGAATTTGTAA
TCGGTGTTTAAGTGATTTGACTTGTAAAATTTGTTGTAAAAATTGTTGATTTGTTGGCTATGTGCTTTTGTGTTCCATTTTGCTTAAGTAGGTTTCTATTAAATACTGAAGAAAG

hide sequence


Protein RefSeqs	NP_062794	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF32314	(Get FASTA)	NCBI Sequence Viewer
	AAF32315	(Get FASTA)	NCBI Sequence Viewer
	AAH65108	(Get FASTA)	NCBI Sequence Viewer
	BAC38129	(Get FASTA)	NCBI Sequence Viewer
	EDL36231	(Get FASTA)	NCBI Sequence Viewer
	EDL36232	(Get FASTA)	NCBI Sequence Viewer
	EDL36233	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000070494
	ENSMUSP00000070494.6
GenBank Protein	Q9JHG0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_062794 ⟸ NM_019820
- Peptide Label:	precursor
- UniProtKB:	Q9JHG0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGTEWHKPKLSLALVLLTLEAGWAQEGSEPVLLEGECLVVCEPGRPTAGGPGGAALGEAPPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGEGFDRTSGCFVAPVRGVYSFRFHVVKVYNR QTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVSLRLRRGNLLGGWKYSSFSGFLIFPL hide sequence

Ensembl Acc Id:

ENSMUSP00000127798 ⟸ ENSMUST00000172378

Ensembl Acc Id:

ENSMUSP00000070494 ⟸ ENSMUST00000063871

Protein Domains

C1q

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JHG0-F1-model_v2	AlphaFold	Q9JHG0	1-197	view protein structure

RGD ID:

8682484

Promoter ID:

EPDNEW_M19273

Type:

initiation region

Name:

Cbln3_1

Description:

Mus musculus cerebellin 3 precursor protein , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	14	55,884,211 - 55,884,271	EPDNEW

RGD ID:

6824753

Promoter ID:

MM_KWN:17000

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day3, Brain, ES_Cell, Kidney, Liver, MEF_B4

Transcripts:

NM_019820

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	14	56,503,041 - 56,503,997 (-)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000040380	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000063871	ENTREZGENE
	ENSMUST00000063871.13	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.120.40	UniProtKB/Swiss-Prot
InterPro	C1q_dom	UniProtKB/Swiss-Prot
	Cerebellin_Synaptic_Org	UniProtKB/Swiss-Prot
	Tumour_necrosis_fac-like_dom	UniProtKB/Swiss-Prot
KEGG Report	mmu:56410	UniProtKB/Swiss-Prot
MGD	MGI:1889286	ENTREZGENE
NCBI Gene	56410	ENTREZGENE
PANTHER	CEREBELLIN-3	UniProtKB/Swiss-Prot
	CEREBELLIN-RELATED	UniProtKB/Swiss-Prot
Pfam	C1q	UniProtKB/Swiss-Prot
PhenoGen	Cbln3	PhenoGen
PRINTS	COMPLEMNTC1Q	UniProtKB/Swiss-Prot
PROSITE	C1Q	UniProtKB/Swiss-Prot
SMART	C1Q	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49842	UniProtKB/Swiss-Prot
UniProt	CBLN3_MOUSE	UniProtKB/Swiss-Prot
	Q8BNN6_MOUSE	UniProtKB/TrEMBL
	Q9JHG0	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

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