Tifa (TRAF-interacting protein with forkhead-associated domain) - Rat Genome Database

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Gene: Tifa (TRAF-interacting protein with forkhead-associated domain) Mus musculus
Analyze
Symbol: Tifa
Name: TRAF-interacting protein with forkhead-associated domain
RGD ID: 1556897
MGI Page MGI
Description: Involved in positive regulation of canonical NF-kappaB signal transduction and tumor necrosis factor-mediated signaling pathway. Predicted to be active in cytoplasm. Is expressed in several structures, including brain ventricular layer; cerebral cortex subventricular zone; gut; liver; and trigeminal ganglion. Orthologous to human TIFA (TRAF interacting protein with forkhead associated domain).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: T2b; T2bp; TRAF-interacting protein with FHA domain-containing protein A; Traf2 binding protein; TRAF2-binding protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393127,582,524 - 127,592,043 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3127,583,454 - 127,625,813 (+)EnsemblGRCm39 Ensembl
GRCm383127,788,875 - 127,798,394 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3127,789,805 - 127,832,164 (+)EnsemblGRCm38mm10GRCm38
MGSCv373127,492,831 - 127,501,307 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363127,781,941 - 127,800,104 (+)NCBIMGSCv36mm8
MGSCv363128,273,227 - 128,291,450 (+)NCBIMGSCv36mm8
Celera3134,292,137 - 134,300,604 (+)NCBICelera
Cytogenetic Map3G2NCBI
cM Map356.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
Benoxacor  (EXP)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
cisplatin  (ISO)
clothianidin  (ISO)
cobalt dichloride  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP,ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diclofenac  (EXP)
dicrotophos  (ISO)
dimethylarsinic acid  (EXP)
dorsomorphin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fipronil  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
hypochlorous acid  (EXP)
ketamine  (ISO)
lipopolysaccharide  (EXP,ISO)
methylarsonic acid  (EXP)
orphenadrine  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
protein kinase inhibitor  (ISO)
quercetin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
Soman  (ISO)
succimer  (EXP)
sunitinib  (ISO)
tamoxifen  (EXP)
tetraphene  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11798190   PMID:12466851   PMID:12477932   PMID:12566447   PMID:14681479   PMID:16141072   PMID:16141073  
PMID:16643855   PMID:21267068   PMID:21677750   PMID:21862448   PMID:21873635   PMID:23722163   PMID:26501855   PMID:32325033   PMID:34321999   PMID:36586274   PMID:38099344   PMID:38355793  


Genomics

Comparative Map Data
Tifa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393127,582,524 - 127,592,043 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3127,583,454 - 127,625,813 (+)EnsemblGRCm39 Ensembl
GRCm383127,788,875 - 127,798,394 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3127,789,805 - 127,832,164 (+)EnsemblGRCm38mm10GRCm38
MGSCv373127,492,831 - 127,501,307 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363127,781,941 - 127,800,104 (+)NCBIMGSCv36mm8
MGSCv363128,273,227 - 128,291,450 (+)NCBIMGSCv36mm8
Celera3134,292,137 - 134,300,604 (+)NCBICelera
Cytogenetic Map3G2NCBI
cM Map356.54NCBI
TIFA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384112,274,537 - 112,285,904 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4112,272,968 - 112,285,955 (-)EnsemblGRCh38hg38GRCh38
GRCh374113,195,693 - 113,207,060 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364113,416,231 - 113,426,508 (-)NCBINCBI36Build 36hg18NCBI36
Celera4110,490,861 - 110,501,136 (-)NCBICelera
Cytogenetic Map4q25NCBI
HuRef4108,928,327 - 108,938,602 (-)NCBIHuRef
CHM1_14113,173,595 - 113,183,871 (-)NCBICHM1_1
T2T-CHM13v2.04115,582,899 - 115,594,247 (-)NCBIT2T-CHM13v2.0
Tifa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82218,927,724 - 218,942,111 (+)NCBIGRCr8
mRatBN7.22216,257,926 - 216,267,635 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2216,234,774 - 216,267,841 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2223,922,080 - 223,931,305 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02221,821,777 - 221,831,000 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02216,675,867 - 216,685,087 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02232,104,394 - 232,137,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2232,104,809 - 232,137,422 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02251,423,679 - 251,482,346 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42225,067,695 - 225,076,898 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12225,054,374 - 225,063,575 (+)NCBI
Celera2208,569,719 - 208,578,933 (+)NCBICelera
Cytogenetic Map2q42NCBI
Tifa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545714,444,814 - 14,450,767 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545714,444,811 - 14,460,168 (+)NCBIChiLan1.0ChiLan1.0
TIFA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23110,350,189 - 110,362,391 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14110,637,766 - 110,655,760 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04104,765,007 - 104,776,217 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14115,328,436 - 115,338,732 (-)NCBIpanpan1.1PanPan1.1panPan2
TIFA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13232,125,870 - 32,135,159 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3232,126,634 - 32,127,191 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha329,896,747 - 9,907,233 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03232,349,595 - 32,360,055 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3232,349,597 - 32,359,545 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13232,332,694 - 32,343,179 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03232,093,596 - 32,104,107 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0327,757,210 - 7,767,777 (+)NCBIUU_Cfam_GSD_1.0
Tifa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053018,750,214 - 8,757,559 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365633,152,049 - 3,158,999 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365633,151,515 - 3,159,071 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIFA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8110,377,892 - 110,389,604 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18110,377,817 - 110,394,190 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28118,358,074 - 118,366,203 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TIFA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1760,074,764 - 60,085,029 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl760,076,999 - 60,077,556 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603738,834,354 - 38,846,161 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tifa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248386,160,712 - 6,167,408 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tifa
580 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1010
Count of miRNA genes:280
Interacting mature miRNAs:319
Transcripts:ENSMUST00000054483, ENSMUST00000163775, ENSMUST00000164447, ENSMUST00000166778, ENSMUST00000171621
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119057332153057456Mouse
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
12910815Ogrq1_moverall growth rate QTL 1 (mouse)3110084357135715812Mouse
4142245Pstc1_mperiosteal circumference 1 (mouse)Not determined3126270248159745316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
26884415Bzwq11_mbi-zygomatic width QTL 11, 16 week (mouse)3124993649137205761Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
1301347Fpli_mfasting plasma insulin (mouse)Not determined3126460514159745316Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1301218Letohc1_mlow ethanol consumption 1 (mouse)Not determined3126352986159745316Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse

Markers in Region
UniSTS:234824  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383127,797,878 - 127,798,201UniSTSGRCm38
MGSCv373127,500,796 - 127,501,119UniSTSGRCm37
Celera3134,300,097 - 134,300,420UniSTS
Cytogenetic Map3G2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB062111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY168652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ664736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000054483   ⟹   ENSMUSP00000054036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3127,583,454 - 127,592,038 (+)Ensembl
GRCm38.p6 Ensembl3127,789,805 - 127,798,389 (+)Ensembl
Ensembl Acc Id: ENSMUST00000163775   ⟹   ENSMUSP00000132309
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3127,583,561 - 127,591,603 (+)Ensembl
GRCm38.p6 Ensembl3127,789,912 - 127,797,954 (+)Ensembl
Ensembl Acc Id: ENSMUST00000164447   ⟹   ENSMUSP00000126692
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3127,584,304 - 127,591,603 (+)Ensembl
GRCm38.p6 Ensembl3127,790,655 - 127,797,954 (+)Ensembl
Ensembl Acc Id: ENSMUST00000166778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3127,583,559 - 127,625,813 (+)Ensembl
GRCm38.p6 Ensembl3127,789,910 - 127,832,164 (+)Ensembl
Ensembl Acc Id: ENSMUST00000171621   ⟹   ENSMUSP00000127700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3127,584,453 - 127,592,038 (+)Ensembl
GRCm38.p6 Ensembl3127,790,804 - 127,798,389 (+)Ensembl
RefSeq Acc Id: NM_001356430   ⟹   NP_001343359
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393127,584,306 - 127,592,043 (+)NCBI
GRCm383127,790,657 - 127,798,394 (+)NCBI
Sequence:
RefSeq Acc Id: NM_145133   ⟹   NP_660115
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393127,583,521 - 127,592,043 (+)NCBI
GRCm383127,789,872 - 127,798,394 (+)NCBI
MGSCv373127,492,831 - 127,501,307 (+)RGD
Celera3134,292,137 - 134,300,604 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006501237   ⟹   XP_006501300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393127,582,524 - 127,592,043 (+)NCBI
GRCm383127,788,875 - 127,798,394 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006501238   ⟹   XP_006501301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393127,583,935 - 127,592,043 (+)NCBI
GRCm383127,790,198 - 127,798,394 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162993   ⟹   XP_036018886
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393127,582,524 - 127,592,043 (+)NCBI
Sequence:
RefSeq Acc Id: NP_660115   ⟸   NM_145133
- UniProtKB: Q793I8 (UniProtKB/Swiss-Prot),   Q3TLY9 (UniProtKB/Swiss-Prot),   I3PQW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501300   ⟸   XM_006501237
- Peptide Label: isoform X2
- UniProtKB: Q793I8 (UniProtKB/Swiss-Prot),   Q3TLY9 (UniProtKB/Swiss-Prot),   I3PQW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501301   ⟸   XM_006501238
- Peptide Label: isoform X2
- UniProtKB: Q793I8 (UniProtKB/Swiss-Prot),   Q3TLY9 (UniProtKB/Swiss-Prot),   I3PQW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001343359   ⟸   NM_001356430
- UniProtKB: Q793I8 (UniProtKB/Swiss-Prot),   Q3TLY9 (UniProtKB/Swiss-Prot),   I3PQW8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000126692   ⟸   ENSMUST00000164447
Ensembl Acc Id: ENSMUSP00000132309   ⟸   ENSMUST00000163775
Ensembl Acc Id: ENSMUSP00000054036   ⟸   ENSMUST00000054483
Ensembl Acc Id: ENSMUSP00000127700   ⟸   ENSMUST00000171621
RefSeq Acc Id: XP_036018886   ⟸   XM_036162993
- Peptide Label: isoform X1
Protein Domains
FHA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q793I8-F1-model_v2 AlphaFold Q793I8 1-184 view protein structure

Promoters
RGD ID:6834574
Promoter ID:MM_KWN:36055
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   Spleen
Transcripts:ENSMUST00000054483,   UC008RHN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363127,492,531 - 127,493,031 (+)MPROMDB
RGD ID:6834547
Promoter ID:MM_KWN:36056
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver
Transcripts:UC008RHO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363127,493,436 - 127,494,367 (+)MPROMDB
RGD ID:6882328
Promoter ID:EPDNEW_M4615
Type:initiation region
Name:Tifa_1
Description:Mus musculus TRAF-interacting protein with forkhead-associateddomain , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4616  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383127,789,995 - 127,790,055EPDNEW
RGD ID:6882330
Promoter ID:EPDNEW_M4616
Type:multiple initiation site
Name:Tifa_2
Description:Mus musculus TRAF-interacting protein with forkhead-associateddomain , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4615  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383127,791,381 - 127,791,441EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2182965 AgrOrtholog
Ensembl Genes ENSMUSG00000046688 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000054483 ENTREZGENE
  ENSMUST00000054483.14 UniProtKB/Swiss-Prot
  ENSMUST00000163775.6 UniProtKB/Swiss-Prot
  ENSMUST00000164447 ENTREZGENE
  ENSMUST00000164447.3 UniProtKB/Swiss-Prot
  ENSMUST00000171621.3 UniProtKB/Swiss-Prot
InterPro FHA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIFA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:211550 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2182965 ENTREZGENE
NCBI Gene 211550 ENTREZGENE
PANTHER PTHR31266 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRAF-INTERACTING PROTEIN WITH FHA DOMAIN-CONTAINING PROTEIN A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tifa PhenoGen
PROSITE FHA_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt I3PQW8 ENTREZGENE, UniProtKB/TrEMBL
  Q3TLY9 ENTREZGENE
  Q793I8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TLY9 UniProtKB/Swiss-Prot