LOC127267889 (H3K4me1 hESC enhancer GRCh37_chr1:19682997-19683497) - Rat Genome Database

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Gene: LOC127267889 (H3K4me1 hESC enhancer GRCh37_chr1:19682997-19683497) Homo sapiens
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Symbol: LOC127267889
Name: H3K4me1 hESC enhancer GRCh37_chr1:19682997-19683497
RGD ID: 155637596
Description: This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
Type: biological-region
RefSeq Status: REVIEWED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38119,356,503 - 19,357,003 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37119,682,997 - 19,683,497 (+)NCBIGRCh37GRCh37hg19GRCh37
T2T-CHM13v2.0119,180,040 - 19,180,540 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30033119  


Genomics

Variants

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Variants in LOC127267889
2 total Variants

QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Expression

RNA-SEQ Expression


Sequence



Additional Information

Database Acc Id Source(s)
COSMIC LOC127267889 COSMIC
GTEx LOC127267889 GTEx
Human Proteome Map LOC127267889 Human Proteome Map
NCBI Gene LOC127267889 ENTREZGENE