LOC127266879 (H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2064553-2065502) - Rat Genome Database

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Gene: LOC127266879 (H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2064553-2065502) Homo sapiens
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Symbol: LOC127266879
Name: H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2064553-2065502
RGD ID: 155633210
Description: This genomic region includes an enhancer that was validated by the ChIP-STARR-seq massively parallel reporter assay (MPRA) in primed human embryonic stem cells, where it is marked by the H3K27ac and H3K4me1 histone modifications. This locus also includes an accessible chromatin subregion that was validated as a silencer based on its ability to repress an origin of replication minimal core promoter by the ATAC-STARR-seq (assay for transposase-accessible chromatin with self-transcribing active regulatory region sequencing) MPRA in GM12878 lymphoblastoid cells. [provided by RefSeq, May 2023]
Type: biological-region
RefSeq Status: REVIEWED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812,132,988 - 2,134,063 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712,064,427 - 2,065,502 (+)NCBIGRCh37GRCh37hg19GRCh37
T2T-CHM13v2.011,567,788 - 1,568,863 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:30033119   PMID:35858748  



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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
RefSeq Transcripts NG_088754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL645703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
COSMIC LOC127266879 COSMIC
GTEx LOC127266879 GTEx
Human Proteome Map LOC127266879 Human Proteome Map
NCBI Gene LOC127266879 ENTREZGENE