n-R5s64 (nuclear encoded rRNA 5S 64) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: n-R5s64 (nuclear encoded rRNA 5S 64) Mus musculus
Analyze
Symbol: n-R5s64
Name: nuclear encoded rRNA 5S 64
RGD ID: 15554413
MGI Page MGI
Description:
Type: rrna
RefSeq Status: MODEL
Previously known as: LOC115488082
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391285,765,251 - 85,765,369 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1285,765,277 - 85,765,337 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1285,765,251 - 85,765,369 (-)EnsemblGRCm39 Ensembl
GRCm381285,718,477 - 85,718,595 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1285,718,477 - 85,718,595 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12D2NCBI
cM Map1239.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:18953034  



.

.
Variants in n-R5s64
5 total Variants

Predicted Target Of
Summary Value
Count of predictions:191
Count of miRNA genes:182
Interacting mature miRNAs:191
Transcripts:ENSMUST00000102019
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.






RefSeq Transcripts XR_004937893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000102019
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1285,718,477 - 85,718,595 (-)Ensembl
Ensembl Acc Id: ENSMUST00000239897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1285,765,251 - 85,765,369 (-)Ensembl
Ensembl Acc Id: ENSMUST00020182400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1285,765,277 - 85,765,337 (-)Ensembl
RefSeq Acc Id: XR_004937893
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391285,765,251 - 85,765,369 (-)NCBI
Sequence:


1 to 9 of 9 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000075973 Ensembl
  ENSMUSG00000119481 Ensembl, ENTREZGENE
  ENSMUSG00002075690 Ensembl
Ensembl Transcript ENSMUST00000239897 ENTREZGENE
MGD MGI:4421909 ENTREZGENE
NCBI Gene LOC115488082 ENTREZGENE
PhenoGen n-R5s64 PhenoGen
RNAcentral URS000071F8DD RNACentral
  URS0000A9361E RNACentral
1 to 9 of 9 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-10-27 n-R5s64  nuclear encoded rRNA 5S 64  Gm54397  predicted gene, 54397  Symbol and/or name change 19259462 PROVISIONAL
2022-10-27 Gm54397  predicted gene, 54397  n-R5s64  nuclear encoded rRNA 5S 64  Symbol and/or name change 19259462 PROVISIONAL
2021-04-26 n-R5s64  nuclear encoded rRNA 5S 64  AC117240.1    Symbol and/or name updated 27372883 PROVISIONAL
2021-03-11 AC117240.1    n-R5s64  nuclear encoded rRNA 5S 64  Symbol and/or name change 19259462 PROVISIONAL
2020-07-02 n-R5s64  nuclear encoded rRNA 5S 64  LOC115488082  5S ribosomal RNA  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115488082  5S ribosomal RNA  n-R5s64  nuclear encoded rRNA 5S 64  Symbol and/or name change 5135510 APPROVED