Zdhhc6 (zinc finger, DHHC domain containing 6) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Zdhhc6 (zinc finger, DHHC domain containing 6) Mus musculus
Analyze
Symbol: Zdhhc6
Name: zinc finger, DHHC domain containing 6
RGD ID: 1551983
MGI Page MGI
Description: Predicted to enable protein-cysteine S-palmitoyltransferase activity and protein-cysteine S-stearoyltransferase activity. Involved in protein palmitoylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Is expressed in several structures, including eye; genitourinary system; heart; lung epithelium; and trunk somite. Orthologous to human ZDHHC6 (zinc finger DHHC-type palmitoyltransferase 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2400007G07Rik; 5930409M18Rik; AI462345; C77369; DHHC-6; H4 homolog; palmitoyltransferase ZDHHC6; probable palmitoyltransferase ZDHHC6; stearoyltransferase ZDHHC6; zinc finger DHHC domain-containing protein 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm5509  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391955,286,648 - 55,304,468 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1955,259,723 - 55,304,464 (-)EnsemblGRCm39 Ensembl
GRCm381955,298,216 - 55,316,036 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1955,271,291 - 55,316,032 (-)EnsemblGRCm38mm10GRCm38
MGSCv371955,372,786 - 55,390,522 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361955,351,546 - 55,369,282 (-)NCBIMGSCv36mm8
Celera1957,489,435 - 57,507,165 (-)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14681479   PMID:15328023   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:16602821   PMID:18287559   PMID:18973680   PMID:20059953   PMID:20211142   PMID:20412781   PMID:21084560   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22988430   PMID:23356259  
PMID:24534427   PMID:25368151   PMID:26781831   PMID:32554809   PMID:36548985   PMID:38583156  


Genomics

Comparative Map Data
Zdhhc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391955,286,648 - 55,304,468 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1955,259,723 - 55,304,464 (-)EnsemblGRCm39 Ensembl
GRCm381955,298,216 - 55,316,036 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1955,271,291 - 55,316,032 (-)EnsemblGRCm38mm10GRCm38
MGSCv371955,372,786 - 55,390,522 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361955,351,546 - 55,369,282 (-)NCBIMGSCv36mm8
Celera1957,489,435 - 57,507,165 (-)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.33NCBI
ZDHHC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810112,424,412 - 112,447,572 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10112,424,428 - 112,447,572 (-)EnsemblGRCh38hg38GRCh38
GRCh3710114,184,170 - 114,207,330 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610114,180,048 - 114,196,662 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410114,180,049 - 114,196,662NCBI
Celera10107,917,581 - 107,934,195 (-)NCBICelera
Cytogenetic Map10q25.2NCBI
HuRef10107,817,705 - 107,834,321 (-)NCBIHuRef
CHM1_110114,471,789 - 114,488,322 (-)NCBICHM1_1
T2T-CHM13v2.010113,315,089 - 113,338,239 (-)NCBIT2T-CHM13v2.0
Zdhhc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81264,340,883 - 264,361,435 (-)NCBIGRCr8
mRatBN7.21254,335,472 - 254,356,141 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1254,335,113 - 254,356,108 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1262,542,990 - 262,561,093 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01269,249,070 - 269,267,173 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01261,896,678 - 261,914,775 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01276,291,411 - 276,309,633 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1276,291,417 - 276,309,099 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01283,686,766 - 283,704,988 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41261,600,778 - 261,606,354 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11261,815,641 - 261,864,000 (-)NCBI
Celera1250,044,717 - 250,062,813 (-)NCBICelera
Cytogenetic Map1q55NCBI
Zdhhc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543117,525,752 - 17,542,539 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543117,525,752 - 17,542,540 (-)NCBIChiLan1.0ChiLan1.0
ZDHHC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28124,305,452 - 124,322,746 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110124,310,782 - 124,328,082 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010109,021,160 - 109,038,445 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110112,459,817 - 112,476,704 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10112,457,937 - 112,474,921 (-)Ensemblpanpan1.1panPan2
ZDHHC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12823,479,978 - 23,494,977 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2823,478,813 - 23,494,977 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2823,631,751 - 23,648,073 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02824,012,445 - 24,028,769 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2824,011,287 - 24,028,764 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12823,569,510 - 23,585,821 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02823,580,670 - 23,596,983 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02823,777,122 - 23,793,450 (-)NCBIUU_Cfam_GSD_1.0
Zdhhc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721322,551,206 - 22,567,759 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364862,993,473 - 3,010,096 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364862,993,519 - 3,010,101 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDHHC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14122,824,817 - 122,848,579 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114122,831,197 - 122,848,599 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214134,028,677 - 134,046,078 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZDHHC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19105,313,392 - 105,329,967 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9105,313,899 - 105,330,069 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604866,516,516 - 66,533,106 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zdhhc6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473734,021,080 - 34,037,248 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473734,021,038 - 34,037,248 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zdhhc6
516 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:139
Count of miRNA genes:124
Interacting mature miRNAs:129
Transcripts:ENSMUST00000076891
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043896Bw21_mbody weight QTL 21 (mouse)Not determined193959606661420004Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3459678661420004Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193837605061420004Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193918406461420004Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
4141650Chldq9_mcholesterol and HDL QTL 9 (mouse)Not determined193788298261420004Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
11667075Led3_mlate embryonic death 3 (mouse)195108837859123872Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193395195261420004Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
1300585Pgia12_mproteoglycan induced arthritis 12 (mouse)Not determined194258685961420004Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193299215861420004Mouse

Markers in Region
D19Mit55  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381955,305,015 - 55,305,156UniSTSGRCm38
MGSCv371955,379,505 - 55,379,646UniSTSGRCm37
Celera1957,496,148 - 57,496,289UniSTS
Cytogenetic Map19D2UniSTS
cM Map1953.0UniSTS
Whitehead Genetic1943.7UniSTS
Whitehead/MRC_RH19584.86UniSTS
Whitehead_YAC19 UniSTS
AI462345  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381955,298,467 - 55,298,546UniSTSGRCm38
GRCm381879,935,807 - 79,935,886UniSTSGRCm38
MGSCv371955,372,957 - 55,373,036UniSTSGRCm37
MGSCv371880,132,546 - 80,132,625UniSTSGRCm37
Celera1957,489,606 - 57,489,685UniSTS
Celera1881,066,754 - 81,066,833UniSTS
Cytogenetic Map19D2UniSTS
Cytogenetic Map18E3UniSTS
Whitehead/MRC_RH19584.76UniSTS
RH126152  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381955,298,402 - 55,298,648UniSTSGRCm38
GRCm381879,935,706 - 79,935,951UniSTSGRCm38
MGSCv371955,372,892 - 55,373,138UniSTSGRCm37
MGSCv371880,132,445 - 80,132,690UniSTSGRCm37
Celera1957,489,541 - 57,489,787UniSTS
Celera1881,066,653 - 81,066,898UniSTS
Cytogenetic Map19D2UniSTS
Cytogenetic Map18E3UniSTS
Whitehead/MRC_RH19582.04UniSTS
D10S1390E  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381955,311,626 - 55,311,785UniSTSGRCm38
GRCm381879,934,690 - 79,934,849UniSTSGRCm38
MGSCv371955,386,116 - 55,386,275UniSTSGRCm37
MGSCv371880,131,429 - 80,131,588UniSTSGRCm37
Celera1957,502,759 - 57,502,918UniSTS
Celera1881,065,634 - 81,065,793UniSTS
Cytogenetic Map19D2UniSTS
Cytogenetic Map18E3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC133100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE853234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX512316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY109555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000076891   ⟹   ENSMUSP00000076157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,286,752 - 55,304,462 (-)Ensembl
GRCm38.p6 Ensembl1955,298,320 - 55,316,030 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223625
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,298,951 - 55,302,794 (-)Ensembl
GRCm38.p6 Ensembl1955,310,519 - 55,314,362 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,290,944 - 55,292,881 (-)Ensembl
GRCm38.p6 Ensembl1955,302,512 - 55,304,449 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223807   ⟹   ENSMUSP00000153697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,289,235 - 55,304,458 (-)Ensembl
GRCm38.p6 Ensembl1955,300,803 - 55,316,026 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224291   ⟹   ENSMUSP00000153221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,289,235 - 55,304,420 (-)Ensembl
GRCm38.p6 Ensembl1955,300,803 - 55,315,988 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224474
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,302,306 - 55,302,951 (-)Ensembl
GRCm38.p6 Ensembl1955,313,874 - 55,314,519 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224897   ⟹   ENSMUSP00000153014
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,286,733 - 55,304,464 (-)Ensembl
GRCm38.p6 Ensembl1955,298,301 - 55,316,032 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225032
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,287,220 - 55,291,521 (-)Ensembl
GRCm38.p6 Ensembl1955,298,788 - 55,303,089 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225495   ⟹   ENSMUSP00000152962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,285,344 - 55,304,428 (-)Ensembl
GRCm38.p6 Ensembl1955,296,912 - 55,315,996 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225963   ⟹   ENSMUSP00000153159
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,259,723 - 55,304,442 (-)Ensembl
GRCm38.p6 Ensembl1955,271,291 - 55,316,010 (-)Ensembl
Ensembl Acc Id: ENSMUST00000226103   ⟹   ENSMUSP00000153404
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,268,006 - 55,304,425 (-)Ensembl
GRCm38.p6 Ensembl1955,279,574 - 55,315,993 (-)Ensembl
RefSeq Acc Id: NM_001033573   ⟹   NP_001028745
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,286,648 - 55,304,468 (-)NCBI
GRCm381955,298,216 - 55,316,036 (-)NCBI
MGSCv371955,372,786 - 55,390,522 (-)RGD
Celera1957,489,435 - 57,507,165 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001360595   ⟹   NP_001347524
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,286,648 - 55,304,468 (-)NCBI
GRCm381955,298,216 - 55,316,036 (-)NCBI
Sequence:
RefSeq Acc Id: NM_025883   ⟹   NP_080159
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,286,648 - 55,304,468 (-)NCBI
GRCm381955,298,216 - 55,316,036 (-)NCBI
MGSCv371955,372,786 - 55,390,522 (-)RGD
Celera1957,489,435 - 57,507,165 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006527268   ⟹   XP_006527331
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,286,725 - 55,304,441 (-)NCBI
GRCm381955,298,293 - 55,316,025 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247316   ⟹   XP_011245618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,286,725 - 55,304,455 (-)NCBI
GRCm381955,298,293 - 55,316,025 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251032   ⟹   XP_030106892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,286,725 - 55,302,779 (-)NCBI
GRCm381955,298,293 - 55,314,347 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001028745   ⟸   NM_001033573
- Peptide Label: isoform 1
- UniProtKB: Q3UT70 (UniProtKB/Swiss-Prot),   Q3U3I8 (UniProtKB/Swiss-Prot),   Q544H1 (UniProtKB/Swiss-Prot),   Q9CPV7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_080159   ⟸   NM_025883
- Peptide Label: isoform 1
- UniProtKB: Q3UT70 (UniProtKB/Swiss-Prot),   Q3U3I8 (UniProtKB/Swiss-Prot),   Q544H1 (UniProtKB/Swiss-Prot),   Q9CPV7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006527331   ⟸   XM_006527268
- Peptide Label: isoform X1
- UniProtKB: Q3UT70 (UniProtKB/Swiss-Prot),   Q3U3I8 (UniProtKB/Swiss-Prot),   Q544H1 (UniProtKB/Swiss-Prot),   Q9CPV7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011245618   ⟸   XM_011247316
- Peptide Label: isoform X1
- UniProtKB: Q3UT70 (UniProtKB/Swiss-Prot),   Q3U3I8 (UniProtKB/Swiss-Prot),   Q544H1 (UniProtKB/Swiss-Prot),   Q9CPV7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001347524   ⟸   NM_001360595
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030106892   ⟸   XM_030251032
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000153697   ⟸   ENSMUST00000223807
Ensembl Acc Id: ENSMUSP00000153159   ⟸   ENSMUST00000225963
Ensembl Acc Id: ENSMUSP00000152962   ⟸   ENSMUST00000225495
Ensembl Acc Id: ENSMUSP00000153014   ⟸   ENSMUST00000224897
Ensembl Acc Id: ENSMUSP00000153221   ⟸   ENSMUST00000224291
Ensembl Acc Id: ENSMUSP00000076157   ⟸   ENSMUST00000076891
Ensembl Acc Id: ENSMUSP00000153404   ⟸   ENSMUST00000226103
Protein Domains
DHHC   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CPV7-F1-model_v2 AlphaFold Q9CPV7 1-413 view protein structure

Promoters
RGD ID:13679814
Promoter ID:EPDNEW_M24056
Type:initiation region
Name:Zdhhc6_1
Description:Mus musculus zinc finger, DHHC domain containing 6 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381955,316,026 - 55,316,086EPDNEW
RGD ID:6830528
Promoter ID:MM_KWN:27376
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000111671,   ENSMUST00000111679,   ENSMUST00000111680,   ENSMUST00000111682,   ENSMUST00000111683,   NM_001033573,   NM_016862,   UC008HXQ.1,   UC008HXR.1,   UC008HXU.1,   UC008HXV.1,   UC008HXW.1,   UC008HXY.1,   UC008HXZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361955,390,436 - 55,390,936 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914230 AgrOrtholog
Ensembl Genes ENSMUSG00000024982 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000076891 ENTREZGENE
  ENSMUST00000076891.7 UniProtKB/Swiss-Prot
  ENSMUST00000223807.2 UniProtKB/TrEMBL
  ENSMUST00000224291.2 UniProtKB/Swiss-Prot
  ENSMUST00000224897 ENTREZGENE
  ENSMUST00000224897.2 UniProtKB/Swiss-Prot
  ENSMUST00000225495.2 UniProtKB/Swiss-Prot
  ENSMUST00000225963.2 UniProtKB/Swiss-Prot
  ENSMUST00000226103.2 UniProtKB/Swiss-Prot
InterPro Palmitoyltrfase_DHHC UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
KEGG Report mmu:66980 UniProtKB/Swiss-Prot
MGD MGI:1914230 ENTREZGENE
NCBI Gene 66980 ENTREZGENE
PANTHER PALMITOYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PALMITOYLTRANSFERASE ZDHHC16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DHHC UniProtKB/Swiss-Prot
  SH3_2 UniProtKB/Swiss-Prot
PhenoGen Zdhhc6 PhenoGen
PROSITE DHHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot
UniProt A0A286YE37_MOUSE UniProtKB/TrEMBL
  Q3U3I8 ENTREZGENE
  Q3UT70 ENTREZGENE
  Q544H1 ENTREZGENE
  Q9CPV7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3U3I8 UniProtKB/Swiss-Prot
  Q3UT70 UniProtKB/Swiss-Prot
  Q544H1 UniProtKB/Swiss-Prot