Or11h4b (olfactory receptor family 11 subfamily H member 4B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Or11h4b (olfactory receptor family 11 subfamily H member 4B) Mus musculus
Analyze
Symbol: Or11h4b
Name: olfactory receptor family 11 subfamily H member 4B
RGD ID: 1550414
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Orthologous to human OR11H4 (olfactory receptor family 11 subfamily H member 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GA_x6K02T2PMLR-6420220-6419279; MOR106; MOR106-; MOR106-16; MOR106-7; olfactory receptor 747; olfactory receptor MOR106-7; Olfr747
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391450,918,148 - 50,919,102 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1450,918,114 - 50,930,663 (-)EnsemblGRCm39 Ensembl
GRCm381450,680,691 - 50,681,645 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1450,680,657 - 50,693,206 (-)EnsemblGRCm38mm10GRCm38
MGSCv371451,300,366 - 51,301,320 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361449,602,642 - 49,603,583 (-)NCBIMGSCv36mm8
Celera1447,023,937 - 47,024,889 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1426.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (ISA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:14611657   PMID:15081110   PMID:21873635   PMID:32295537  


Genomics

Comparative Map Data
Or11h4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391450,918,148 - 50,919,102 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1450,918,114 - 50,930,663 (-)EnsemblGRCm39 Ensembl
GRCm381450,680,691 - 50,681,645 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1450,680,657 - 50,693,206 (-)EnsemblGRCm38mm10GRCm38
MGSCv371451,300,366 - 51,301,320 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361449,602,642 - 49,603,583 (-)NCBIMGSCv36mm8
Celera1447,023,937 - 47,024,889 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1426.2NCBI
OR11H4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,239,286 - 20,244,349 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,239,286 - 20,244,349 (+)EnsemblGRCh38hg38GRCh38
GRCh371420,707,445 - 20,712,508 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361419,780,791 - 19,781,765 (+)NCBINCBI36Build 36hg18NCBI36
Build 341419,780,790 - 19,781,765NCBI
Celera14572,152 - 573,126 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef14833,103 - 834,077 (+)NCBIHuRef
CHM1_11420,711,917 - 20,712,891 (+)NCBICHM1_1
T2T-CHM13v2.01414,436,092 - 14,441,147 (+)NCBIT2T-CHM13v2.0
Or11h4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,420,560 - 26,421,546 (-)NCBIGRCr8
mRatBN7.21523,946,991 - 23,947,977 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1523,946,943 - 23,953,404 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1526,718,211 - 26,719,197 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,683,366 - 27,684,352 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01525,926,744 - 25,927,730 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01527,548,762 - 27,549,748 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1527,548,762 - 27,549,748 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01531,484,022 - 31,485,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41526,697,871 - 26,698,857 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11526,713,570 - 26,714,557 (-)NCBI
Celera1524,273,617 - 24,274,603 (-)NCBICelera
Cytogenetic Map15p14NCBI
LOC482553
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11517,624,441 - 17,625,150 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,108,896 - 18,109,849 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01517,882,194 - 17,883,147 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1517,882,170 - 17,883,147 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11517,565,667 - 17,566,620 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01517,619,555 - 17,620,508 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,748,953 - 17,749,906 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Or11h4b
39 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:58
Interacting mature miRNAs:60
Transcripts:ENSMUST00000078075
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse

Markers in Region
UniSTS:485060  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381450,680,691 - 50,681,632UniSTSGRCm38
MGSCv371451,300,366 - 51,301,307UniSTSGRCm37
Celera1446,960,111 - 46,961,052UniSTS
Cytogenetic Map14C1UniSTS
UniSTS:492909  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381450,736,158 - 50,737,223UniSTSGRCm38
MGSCv371451,355,833 - 51,356,898UniSTSGRCm37
Celera1447,023,876 - 47,024,940UniSTS
Cytogenetic Map14C1UniSTS
UniSTS:494291  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381450,680,630 - 50,681,669UniSTSGRCm38
MGSCv371451,300,305 - 51,301,344UniSTSGRCm37
Celera1446,960,050 - 46,961,089UniSTS
Cytogenetic Map14C1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000078075   ⟹   ENSMUSP00000077220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1450,918,148 - 50,919,102 (-)Ensembl
GRCm38.p6 Ensembl1450,680,691 - 50,681,645 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205373   ⟹   ENSMUSP00000145625
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1450,918,114 - 50,930,663 (-)Ensembl
GRCm38.p6 Ensembl1450,680,657 - 50,693,206 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205897   ⟹   ENSMUSP00000145956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1450,919,039 - 50,929,186 (-)Ensembl
GRCm38.p6 Ensembl1450,681,582 - 50,691,729 (-)Ensembl
Ensembl Acc Id: ENSMUST00000213238   ⟹   ENSMUSP00000149081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1450,918,114 - 50,930,361 (-)Ensembl
GRCm38.p6 Ensembl1450,680,657 - 50,692,904 (-)Ensembl
RefSeq Acc Id: NM_207156   ⟹   NP_997039
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391450,918,148 - 50,919,102 (-)NCBI
GRCm381450,680,691 - 50,681,645 (-)ENTREZGENE
MGSCv371451,300,366 - 51,301,320 (-)RGD
Celera1446,960,111 - 46,961,065 (-)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_997039 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL61489 (Get FASTA)   NCBI Sequence Viewer  
  AAP71208 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000077220
  ENSMUSP00000077220.5
  ENSMUSP00000145625.2
  ENSMUSP00000145956.2
  ENSMUSP00000149081.2
RefSeq Acc Id: NP_997039   ⟸   NM_207156
- UniProtKB: E9PXH6 (UniProtKB/TrEMBL),   Q7TRL6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000145956   ⟸   ENSMUST00000205897
Ensembl Acc Id: ENSMUSP00000145625   ⟸   ENSMUST00000205373
Ensembl Acc Id: ENSMUSP00000149081   ⟸   ENSMUST00000213238
Ensembl Acc Id: ENSMUSP00000077220   ⟸   ENSMUST00000078075
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PXH6-F1-model_v2 AlphaFold E9PXH6 1-313 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3030581 AgrOrtholog
Ensembl Genes ENSMUSG00000057179 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000078075 ENTREZGENE
  ENSMUST00000078075.5 UniProtKB/TrEMBL
  ENSMUST00000205373.3 UniProtKB/TrEMBL
  ENSMUST00000205897.2 UniProtKB/TrEMBL
  ENSMUST00000213238.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_GPCR1 UniProtKB/TrEMBL
KEGG Report mmu:258264 UniProtKB/TrEMBL
MGD MGI:3030581 ENTREZGENE
NCBI Gene 258264 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 11H4 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or11h4b PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0U1RPE9_MOUSE UniProtKB/TrEMBL
  E9PXH6 ENTREZGENE, UniProtKB/TrEMBL
  Q7TRL6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-23 Or11h4b  olfactory receptor family 11 subfamily H member 4B  Olfr747  olfactory receptor 747  Symbol and/or name updated 27372883 PROVISIONAL