Or11h4b (olfactory receptor family 11 subfamily H member 4B) - Rat Genome Database

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Gene: Or11h4b (olfactory receptor family 11 subfamily H member 4B) Mus musculus
Analyze
Symbol: Or11h4b
Name: olfactory receptor family 11 subfamily H member 4B
RGD ID: 1550414
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Orthologous to human OR11H4 (olfactory receptor family 11 subfamily H member 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GA_x6K02T2PMLR-6420220-6419279; MOR106; MOR106-; MOR106-16; MOR106-7; olfactory receptor 747; olfactory receptor MOR106-7; Olfr747
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391450,918,148 - 50,919,102 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1450,918,114 - 50,930,663 (-)EnsemblGRCm39 Ensembl
GRCm381450,680,691 - 50,681,645 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1450,680,657 - 50,693,206 (-)EnsemblGRCm38mm10GRCm38
MGSCv371451,300,366 - 51,301,320 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361449,602,642 - 49,603,583 (-)NCBIMGSCv36mm8
Celera1447,023,937 - 47,024,889 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1426.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or11h4bMouse1,2-dimethylhydrazine decreases expressionEXP 64804641 and 2-Dimethylhydrazine results in decreased expression of OR11H4 mRNACTDPMID:22206623
Or11h4bMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of OR11H4 mRNACTDPMID:21570461
Or11h4bMouse3-methylcholanthrene decreases expressionEXP 6480464Methylcholanthrene results in decreased expression of OR11H4 mRNACTDPMID:25926378
Or11h4bMousebenzo[a]pyrene decreases methylationISOOR11H4 (Homo sapiens)6480464Benzo(a)pyrene results in decreased methylation of OR11H4 promoterCTDPMID:27901495
Or11h4bMousebenzo[a]pyrene affects methylationISOOR11H4 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of OR11H4 exonCTDPMID:27901495
Or11h4bMousebisphenol A decreases methylationISOOR11H4 (Homo sapiens)6480464bisphenol A results in decreased methylation of OR11H4 geneCTDPMID:31601247
Or11h4bMousebisphenol A decreases expressionISOOr11h4 (Rattus norvegicus)6480464bisphenol A results in decreased expression of OR11H4 mRNACTDPMID:25181051
Or11h4bMouseCGP 52608 multiple interactionsISOOR11H4 (Homo sapiens)6480464CGP 52608 promotes the reaction [RORA protein binds to OR11H4 gene]CTDPMID:28238834
Or11h4bMousecopper atom increases expressionISOOr11h4 (Rattus norvegicus)6480464Copper deficiency results in increased expression of OR11H4 mRNACTDPMID:26033743
Or11h4bMousecopper(0) increases expressionISOOr11h4 (Rattus norvegicus)6480464Copper deficiency results in increased expression of OR11H4 mRNACTDPMID:26033743
Or11h4bMousefolic acid decreases expressionEXP 6480464Folic Acid results in decreased expression of OR11H4 mRNACTDPMID:25629700
Or11h4bMousethioacetamide decreases expressionISOOr11h4 (Rattus norvegicus)6480464Thioacetamide results in decreased expression of OR11H4 mRNACTDPMID:23411599
Or11h4bMousevalproic acid increases methylationISOOR11H4 (Homo sapiens)6480464Valproic Acid results in increased methylation of OR11H4 geneCTDPMID:29154799

1 to 13 of 13 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or11h4bMouseG protein-coupled receptor signaling pathway acts_upstream_of_or_withinISARefSeq:NP_0646842290270 PMID:14611657MGIPMID:14611657
Or11h4bMousesensory perception of smell acts_upstream_of_or_withinISARefSeq:NP_0646842290270 PMID:14611657MGIPMID:14611657

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or11h4bMousemembrane located_inISARefSeq:NP_0646842290270 PMID:14611657MGIPMID:14611657

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or11h4bMouseolfactory receptor activity enablesISARefSeq:NP_0646842290270 PMID:14611657MGIPMID:14611657


#
Reference Title
Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:11802173   PMID:11875048   PMID:14611657   PMID:15081110   PMID:21873635   PMID:32295537  



Or11h4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391450,918,148 - 50,919,102 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1450,918,114 - 50,930,663 (-)EnsemblGRCm39 Ensembl
GRCm381450,680,691 - 50,681,645 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1450,680,657 - 50,693,206 (-)EnsemblGRCm38mm10GRCm38
MGSCv371451,300,366 - 51,301,320 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361449,602,642 - 49,603,583 (-)NCBIMGSCv36mm8
Celera1447,023,937 - 47,024,889 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1426.2NCBI
OR11H4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,239,286 - 20,244,349 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,239,286 - 20,244,349 (+)EnsemblGRCh38hg38GRCh38
GRCh371420,707,445 - 20,712,508 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361419,780,791 - 19,781,765 (+)NCBINCBI36Build 36hg18NCBI36
Build 341419,780,790 - 19,781,765NCBI
Celera14572,152 - 573,126 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef14833,103 - 834,077 (+)NCBIHuRef
CHM1_11420,711,917 - 20,712,891 (+)NCBICHM1_1
T2T-CHM13v2.01414,436,092 - 14,441,147 (+)NCBIT2T-CHM13v2.0
Or11h4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,420,560 - 26,421,546 (-)NCBIGRCr8
mRatBN7.21523,946,991 - 23,947,977 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1523,946,943 - 23,953,404 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1526,718,211 - 26,719,197 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,683,366 - 27,684,352 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01525,926,744 - 25,927,730 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01527,548,762 - 27,549,748 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1527,548,762 - 27,549,748 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01531,484,022 - 31,485,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41526,697,871 - 26,698,857 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11526,713,570 - 26,714,557 (-)NCBI
Celera1524,273,617 - 24,274,603 (-)NCBICelera
Cytogenetic Map15p14NCBI
LOC482553
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11517,624,441 - 17,625,150 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,108,896 - 18,109,849 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01517,882,194 - 17,883,147 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1517,882,170 - 17,883,147 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11517,565,667 - 17,566,620 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01517,619,555 - 17,620,508 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,748,953 - 17,749,906 (+)NCBIUU_Cfam_GSD_1.0

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Variants in Or11h4b
39 total Variants

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:58
Interacting mature miRNAs:60
Transcripts:ENSMUST00000078075
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse

1 to 10 of 23 rows
UniSTS:485060  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381450,680,691 - 50,681,632UniSTSGRCm38
MGSCv371451,300,366 - 51,301,307UniSTSGRCm37
Celera1446,960,111 - 46,961,052UniSTS
Cytogenetic Map14C1UniSTS
UniSTS:492909  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381450,736,158 - 50,737,223UniSTSGRCm38
MGSCv371451,355,833 - 51,356,898UniSTSGRCm37
Celera1447,023,876 - 47,024,940UniSTS
Cytogenetic Map14C1UniSTS
UniSTS:494291  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381450,680,630 - 50,681,669UniSTSGRCm38
MGSCv371451,300,305 - 51,301,344UniSTSGRCm37
Celera1446,960,050 - 46,961,089UniSTS
Cytogenetic Map14C1UniSTS







Ensembl Acc Id: ENSMUST00000078075   ⟹   ENSMUSP00000077220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1450,918,148 - 50,919,102 (-)Ensembl
GRCm38.p6 Ensembl1450,680,691 - 50,681,645 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205373   ⟹   ENSMUSP00000145625
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1450,918,114 - 50,930,663 (-)Ensembl
GRCm38.p6 Ensembl1450,680,657 - 50,693,206 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205897   ⟹   ENSMUSP00000145956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1450,919,039 - 50,929,186 (-)Ensembl
GRCm38.p6 Ensembl1450,681,582 - 50,691,729 (-)Ensembl
Ensembl Acc Id: ENSMUST00000213238   ⟹   ENSMUSP00000149081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1450,918,114 - 50,930,361 (-)Ensembl
GRCm38.p6 Ensembl1450,680,657 - 50,692,904 (-)Ensembl
RefSeq Acc Id: NM_207156   ⟹   NP_997039
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391450,918,148 - 50,919,102 (-)NCBI
GRCm381450,680,691 - 50,681,645 (-)ENTREZGENE
MGSCv371451,300,366 - 51,301,320 (-)RGD
Celera1446,960,111 - 46,961,065 (-)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
Protein RefSeqs NP_997039 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL61489 (Get FASTA)   NCBI Sequence Viewer  
  AAP71208 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000077220
  ENSMUSP00000077220.5
  ENSMUSP00000145625.2
  ENSMUSP00000145956.2
  ENSMUSP00000149081.2
RefSeq Acc Id: NP_997039   ⟸   NM_207156
- UniProtKB: E9PXH6 (UniProtKB/TrEMBL),   Q7TRL6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000145956   ⟸   ENSMUST00000205897
Ensembl Acc Id: ENSMUSP00000145625   ⟸   ENSMUST00000205373
Ensembl Acc Id: ENSMUSP00000149081   ⟸   ENSMUST00000213238
Ensembl Acc Id: ENSMUSP00000077220   ⟸   ENSMUST00000078075
Name Modeler Protein Id AA Range Protein Structure
AF-E9PXH6-F1-model_v2 AlphaFold E9PXH6 1-313 view protein structure



1 to 26 of 26 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000057179 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000078075 ENTREZGENE
  ENSMUST00000078075.5 UniProtKB/TrEMBL
  ENSMUST00000205373.3 UniProtKB/TrEMBL
  ENSMUST00000205897.2 UniProtKB/TrEMBL
  ENSMUST00000213238.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_GPCR1 UniProtKB/TrEMBL
KEGG Report mmu:258264 UniProtKB/TrEMBL
MGD MGI:3030581 ENTREZGENE
NCBI Gene 258264 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 11H4 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or11h4b PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0U1RPE9_MOUSE UniProtKB/TrEMBL
  E9PXH6 ENTREZGENE, UniProtKB/TrEMBL
  Q7TRL6 ENTREZGENE, UniProtKB/TrEMBL
1 to 26 of 26 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-23 Or11h4b  olfactory receptor family 11 subfamily H member 4B  Olfr747  olfactory receptor 747  Symbol and/or name updated 27372883 PROVISIONAL