AABR07058745.1 (null) - Rat Genome Database

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Pathways
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Gene: AABR07058745.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07058745.1
Name:
RGD ID: 15006063
Description: FOUND IN extracellular matrix (inferred); extracellular space (inferred)
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl7123,059,219 - 123,107,765 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl7136,037,230 - 136,076,482 (+)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:91
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000071423
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system reproductive system
High
Medium
Low
Below cutoff 2 8

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000071423   ⟹   ENSRNOP00000063958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7123,059,219 - 123,107,765 (+)Ensembl
Rnor_6.0 Ensembl7136,037,230 - 136,076,482 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000063958.3
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000063958   ⟸   ENSRNOT00000071423
Protein Domains
VWFD

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000050884 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071423.3 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro Ser_inhib-like_sf UniProtKB/TrEMBL
  TIL_dom UniProtKB/TrEMBL
  Unchr_dom_Cys-rich UniProtKB/TrEMBL
  VWF_type-D UniProtKB/TrEMBL
PANTHER EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED UniProtKB/TrEMBL
  MUCIN-19-LIKE UniProtKB/TrEMBL
Pfam PF08742 UniProtKB/TrEMBL
  TIL UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
PhenoGen AABR07058745.1 PhenoGen
PROSITE VWFD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000050884 RatGTEx
SMART VWD UniProtKB/TrEMBL
Superfamily-SCOP SSF57567 UniProtKB/TrEMBL
UniProt M0R3P0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07058745.1        Symbol and Name status set to provisional 45752 PROVISIONAL