5S_rRNA (5S ribosomal RNA) - Rat Genome Database

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Gene: 5S_rRNA (5S ribosomal RNA) Rattus norvegicus
Analyze
Symbol: 5S_rRNA
Name: 5S ribosomal RNA
RGD ID: 15004509
Description:
Type: rrna
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1036,306,327 - 36,306,443 (+)EnsemblRnor6.0rn6Rnor6.0


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:45
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000063478
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 1 2 2 2 3 7 1
Below cutoff 4 4 6 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000063478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1036,306,327 - 36,306,443 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000041725 Ensembl
PhenoGen 5S_rRNA PhenoGen
RatGTEx ENSRNOG00000041725 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 5S_rRNA  5S ribosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL