AC110846.1 (null) - Rat Genome Database

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Pathways
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Gene: AC110846.1 (null) Rattus norvegicus
Analyze
Symbol: AC110846.1
Name:
RGD ID: 15004274
Description:
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl178,640,402 - 78,640,866 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl179,899,184 - 79,899,648 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:71
Interacting mature miRNAs:74
Transcripts:ENSRNOT00000057960
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system reproductive system
High
Medium
Low
Below cutoff 5 4

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000057960   ⟹   ENSRNOP00000054769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl178,640,402 - 78,640,866 (-)Ensembl
Rnor_6.0 Ensembl179,899,184 - 79,899,648 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000054769.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000054769   ⟸   ENSRNOT00000057960

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4B9-F1-model_v2 AlphaFold D4A4B9 1-154 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000038087 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057960.2 UniProtKB/TrEMBL
PhenoGen AC110846.1 PhenoGen
RatGTEx ENSRNOG00000038087 RatGTEx
UniProt D4A4B9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AC110846.1        Symbol and Name status set to provisional 45752 PROVISIONAL