AABR07068154.1 (null) - Rat Genome Database

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Gene: AABR07068154.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07068154.1
Name:
RGD ID: 15003668
Description: Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in vesicle-mediated transport.
Type: processed_pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl981,784,742 - 81,786,124 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl986,257,081 - 86,257,779 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AABR07068154.1Ratvesicle-mediated transport involved_inIBAFB:FBgn0025382 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AABR07068154.1RatGTP binding enablesIBAMGI:1861441 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AABR07068154.1RatGTP binding enablesIEAUniProtKB-KW:KW-03421600115GO_REF:0000043UniProtGO_REF:0000043
AABR07068154.1RatGTP binding enablesIEAInterPro:IPR001806 and InterPro:IPR0052251600115GO_REF:0000002InterProGO_REF:0000002
AABR07068154.1RatGTPase activity enablesIBAMGI:104606 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AABR07068154.1RatGTPase activity enablesIEAInterPro:IPR0018061600115GO_REF:0000002InterProGO_REF:0000002



.

1 to 10 of 17 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 11p15.5-15.1(chr11:446754-18904742)x3 copy number gain See cases [RCV000133997] Chr11:446754..18904742 [GRCh38]
Chr11:446754..18926289 [GRCh37]
Chr11:436754..18882865 [NCBI36]
Chr11:11p15.5-15.1		 pathogenic
GRCh38/hg38 11p15.5-15.4(chr11:1975511-2888695)x3 copy number gain See cases [RCV000136112] Chr11:1975511..2888695 [GRCh38]
Chr11:1996741..2909925 [GRCh37]
Chr11:1953317..2866501 [NCBI36]
Chr11:11p15.5-15.4		 pathogenic
GRCh38/hg38 11p15.5(chr11:1975511-2138446)x3 copy number gain See cases [RCV000137018] Chr11:1975511..2138446 [GRCh38]
Chr11:1996741..2159676 [GRCh37]
Chr11:1953317..2116252 [NCBI36]
Chr11:11p15.5		 benign
GRCh38/hg38 11p15.5-15.4(chr11:1537379-3360769)x3 copy number gain See cases [RCV000136847] Chr11:1537379..3360769 [GRCh38]
Chr11:1558609..3381999 [GRCh37]
Chr11:1515185..3338575 [NCBI36]
Chr11:11p15.5-15.4		 pathogenic
GRCh38/hg38 11p15.5-15.4(chr11:1975511-3624139)x1 copy number loss See cases [RCV000137066] Chr11:1975511..3624139 [GRCh38]
Chr11:1996741..3645369 [GRCh37]
Chr11:1953317..3601945 [NCBI36]
Chr11:11p15.5-15.4		 uncertain significance
GRCh38/hg38 11p15.5(chr11:2052381-2138446)x3 copy number gain See cases [RCV000137157] Chr11:2052381..2138446 [GRCh38]
Chr11:2073611..2159676 [GRCh37]
Chr11:2030187..2116252 [NCBI36]
Chr11:11p15.5		 uncertain significance
GRCh38/hg38 11p15.5-15.4(chr11:61793-10727969)x3 copy number gain See cases [RCV000139987] Chr11:61793..10727969 [GRCh38]
Chr11:61793..10749516 [GRCh37]
Chr11:51793..10706092 [NCBI36]
Chr11:11p15.5-15.4		 pathogenic
GRCh38/hg38 11p15.5(chr11:2127344-2159430)x3 copy number gain See cases [RCV000141243] Chr11:2127344..2159430 [GRCh38]
Chr11:2148574..2180660 [GRCh37]
Chr11:2105150..2137236 [NCBI36]
Chr11:11p15.5		 uncertain significance
GRCh38/hg38 11p15.5-15.4(chr11:1132899-3213923)x1 copy number loss See cases [RCV000142464] Chr11:1132899..3213923 [GRCh38]
Chr11:1126807..3235153 [GRCh37]
Chr11:1116807..3191729 [NCBI36]
Chr11:11p15.5-15.4		 pathogenic
GRCh38/hg38 11p15.5-15.4(chr11:196855-5321874)x3 copy number gain See cases [RCV000142890] Chr11:196855..5321874 [GRCh38]
Chr11:196855..5343104 [GRCh37]
Chr11:186855..5299680 [NCBI36]
Chr11:11p15.5-15.4		 pathogenic
1 to 10 of 17 rows

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:19
Interacting mature miRNAs:19
Transcripts:ENSRNOT00000038372
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 42 106 82 81 50 25 50 6 197 90 86 40 52 31



Ensembl Acc Id: ENSRNOT00000038372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl981,784,742 - 81,786,124 (-)Ensembl
Rnor_6.0 Ensembl986,257,081 - 86,257,779 (-)Ensembl
Ensembl Protein ENSRNOP00000080743.1


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 21 of 21 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSRNOG00000027719 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038372.8 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PhenoGen AABR07068154.1 PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027719 RatGTEx
SMART ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I5ZQR4_RAT UniProtKB/TrEMBL
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07068154.1        Symbol and Name status set to provisional 45752 PROVISIONAL