AABR07026797.1 (null) - Rat Genome Database

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Gene: AABR07026797.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07026797.1
Name:
RGD ID: 15003469
Description: Predicted to enable RNA binding activity. Predicted to be located in nucleus.
Type: processed_pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl17733,746 - 735,096 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl171,909,541 - 1,909,882 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function
RNA binding  (IEA)

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:56
Interacting mature miRNAs:58
Transcripts:ENSRNOT00000025031
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 1 1
Low 3 4 26 19 10 19 3 55 12 32 4
Below cutoff 24 16 11 6 11 3 3 17 13 4 6 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSRNOT00000025031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl17733,746 - 735,096 (+)Ensembl
Rnor_6.0 Ensembl171,909,541 - 1,909,882 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000081305.1
Reference Protein Sequences
Protein Domains
RRM

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000018554 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025031.6 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
PANTHER SERINE/ARGININE RICH SPLICING FACTOR UniProtKB/TrEMBL
  SERINE_ARGININE-RICH SPLICING FACTOR 3 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PhenoGen AABR07026797.1 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018554 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8I5ZSN8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07026797.1        Symbol and Name status set to provisional 45752 PROVISIONAL