AABR07026291.1 (null) - Rat Genome Database

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Gene: AABR07026291.1 (null) Rattus norvegicus
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Symbol: AABR07026291.1
Name:
RGD ID: 15003412
Description: Predicted to enable dynein light intermediate chain binding activity and microtubule binding activity. Predicted to be involved in cytoplasmic microtubule organization and cytoskeleton-dependent intracellular transport. Predicted to be located in microtubule. Predicted to be active in centrosome and cytoplasm.
Type: protein-coding
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1670,778,913 - 70,831,164 (+)EnsemblRnor6.0rn6Rnor6.0



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AABR07026291.1Ratcytoplasmic microtubule organization involved_inIBAMGI:1925213 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AABR07026291.1Ratcytoplasmic microtubule organization involved_inIEAInterPro:IPR0086361600115GO_REF:0000002InterProGO_REF:0000002
AABR07026291.1Ratcytoskeleton-dependent intracellular transport involved_inIEAInterPro:IPR0439361600115GO_REF:0000002InterProGO_REF:0000002
AABR07026291.1Ratcytoskeleton-dependent intracellular transport involved_inIBAFB:FBgn0001202 and PANTHER:PTN0004366221600115GO_REF:0000033GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AABR07026291.1Ratcentrosome is_active_inIBAMGI:2443554 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AABR07026291.1Ratcytoplasm is_active_inIBAFB:FBgn0001202 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AABR07026291.1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
AABR07026291.1Ratcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
AABR07026291.1Ratcytoskeleton located_inIEAUniProtKB-SubCell:SL-00901600115GO_REF:0000044UniProtGO_REF:0000044
AABR07026291.1Ratmicrotubule located_inIEAUniProtKB-KW:KW-04931600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AABR07026291.1Ratdynein light intermediate chain binding enablesIBAPANTHER:PTN000436622 and WB:WBGene000069971600115GO_REF:0000033GO_CentralGO_REF:0000033
AABR07026291.1Ratmicrotubule binding enablesIBAFB:FBgn0001202 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
AABR07026291.1Ratmicrotubule binding enablesIEAInterPro:IPR0086361600115GO_REF:0000002InterProGO_REF:0000002
AABR07026291.1Ratprotein binding enablesIPIUniProtKB:P217578553823PMID:17237231IntAct 


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The microtubule-binding protein Hook3 interacts with a cytoplasmic domain of scavenger receptor A. Sano H, etal., J Biol Chem. 2007 Mar 16;282(11):7973-81. Epub 2007 Jan 19.


.



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000019281   ⟹   ENSRNOP00000019281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,009,485 - 66,061,338 (+)Ensembl
Rnor_6.0 Ensembl1670,778,913 - 70,831,164 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097055   ⟹   ENSRNOP00000091293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1665,954,350 - 66,049,636 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100260   ⟹   ENSRNOP00000085710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1665,954,350 - 66,049,636 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107751   ⟹   ENSRNOP00000082084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,009,485 - 66,060,195 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117895   ⟹   ENSRNOP00000083319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1665,954,350 - 66,053,329 (+)Ensembl
Ensembl Protein ENSRNOP00000019281.5
  ENSRNOP00000082084.1
  ENSRNOP00000085710.1
Ensembl Acc Id: ENSRNOP00000019281   ⟸   ENSRNOT00000019281
Ensembl Acc Id: ENSRNOP00000082084   ⟸   ENSRNOT00000107751
Ensembl Acc Id: ENSRNOP00000091293   ⟸   ENSRNOT00000097055
Ensembl Acc Id: ENSRNOP00000085710   ⟸   ENSRNOT00000100260
Ensembl Acc Id: ENSRNOP00000083319   ⟸   ENSRNOT00000117895
Calponin-homology (CH)   Hook C-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-Q7TQ77-F1-model_v2 AlphaFold Q7TQ77 1-709 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 20 of 20 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSRNOG00000014275 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019281.8 UniProtKB/TrEMBL
  ENSRNOT00000100260.1 UniProtKB/TrEMBL
  ENSRNOT00000107751.1 UniProtKB/TrEMBL
Gene3D-CATH Calponin-like domain UniProtKB/TrEMBL
InterPro CH_dom UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  Hook-like_fam UniProtKB/TrEMBL
  HOOK_N UniProtKB/TrEMBL
PANTHER HOOK PROTEINS UniProtKB/TrEMBL
  PROTEIN HOOK HOMOLOG 3 UniProtKB/TrEMBL
Pfam HOOK UniProtKB/TrEMBL
  HOOK_N UniProtKB/TrEMBL
PhenoGen AABR07026291.1 PhenoGen
PROSITE PS50021 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014275 RatGTEx
Superfamily-SCOP Hook domain UniProtKB/TrEMBL
UniProt A0A8I5ZUA0_RAT UniProtKB/TrEMBL
  A0A8I6A0R7_RAT UniProtKB/TrEMBL
  Q7TQ77_RAT UniProtKB/TrEMBL
1 to 20 of 20 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07026291.1        Symbol and Name status set to provisional 45752 PROVISIONAL