Gm23758 (predicted gene, 23758) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gm23758 (predicted gene, 23758) Mus musculus
Analyze
Symbol: Gm23758
Name: predicted gene, 23758
RGD ID: 15002940
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391452,513,988 - 52,514,077 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1452,513,988 - 52,514,077 (+)EnsemblGRCm39 Ensembl
GRCm381452,276,531 - 52,276,620 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,276,531 - 52,276,620 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gm23758
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391452,513,988 - 52,514,077 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1452,513,988 - 52,514,077 (+)EnsemblGRCm39 Ensembl
GRCm381452,276,531 - 52,276,620 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,276,531 - 52,276,620 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14C2NCBI
SNORA72
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381224,179,641 - 224,179,767 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1224,179,641 - 224,179,767 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1q42.11NCBI
T2T-CHM13v2.01223,368,884 - 223,369,010 (+)NCBIT2T-CHM13v2.0
Snora72
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81527,459,539 - 27,459,631 (+)NCBIGRCr8
mRatBN7.21524,986,050 - 24,986,142 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,986,050 - 24,986,142 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1528,693,182 - 28,693,274 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15p14NCBI
LOC119864018
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1737,147,052 - 37,147,159 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01738,155,105 - 38,155,212 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1738,155,105 - 38,155,212 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11737,290,233 - 37,290,339 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01737,346,600 - 37,346,707 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01737,559,619 - 37,559,727 (-)NCBIUU_Cfam_GSD_1.0

.

.
Variants in Gm23758
4 total Variants

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:51
Interacting mature miRNAs:52
Transcripts:ENSMUST00000158354
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse

1 to 10 of 25 rows





RefSeq Transcripts XR_004938698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000158354
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1452,513,988 - 52,514,077 (+)Ensembl
GRCm38.p6 Ensembl1452,276,531 - 52,276,620 (+)Ensembl
RefSeq Acc Id: XR_004938698
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391452,513,988 - 52,514,077 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000088979 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000158354 ENTREZGENE
MGD MGI:5453535 ENTREZGENE
NCBI Gene Gm23758 ENTREZGENE
PhenoGen Gm23758 PhenoGen
RNAcentral URS000063631D RNACentral