Snora72 (Small nucleolar RNA SNORA72) - Rat Genome Database

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Gene: Snora72 (Small nucleolar RNA SNORA72) Rattus norvegicus
Analyze
Symbol: Snora72
Name: Small nucleolar RNA SNORA72
RGD ID: 41207541
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120097208
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81527,459,539 - 27,459,631 (+)NCBIGRCr8
mRatBN7.21524,986,050 - 24,986,142 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,986,050 - 24,986,142 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1528,693,182 - 28,693,274 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Snora72
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81527,459,539 - 27,459,631 (+)NCBIGRCr8
mRatBN7.21524,986,050 - 24,986,142 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,986,050 - 24,986,142 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1528,693,182 - 28,693,274 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15p14NCBI
SNORA72
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381224,179,641 - 224,179,767 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1224,179,641 - 224,179,767 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1q42.11NCBI
T2T-CHM13v2.01223,368,884 - 223,369,010 (+)NCBIT2T-CHM13v2.0
Gm23758
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391452,513,988 - 52,514,077 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1452,513,988 - 52,514,077 (+)EnsemblGRCm39 Ensembl
GRCm381452,276,531 - 52,276,620 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,276,531 - 52,276,620 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map14C2NCBI
LOC119864018
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1737,147,052 - 37,147,159 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01738,155,105 - 38,155,212 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1738,155,105 - 38,155,212 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11737,290,233 - 37,290,339 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01737,346,600 - 37,346,707 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01737,559,619 - 37,559,727 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000082270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1524,986,050 - 24,986,142 (+)Ensembl
RefSeq Acc Id: XR_005494444
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81527,459,539 - 27,459,631 (+)NCBI
mRatBN7.21524,986,050 - 24,986,142 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-13976 BioCyc
Ensembl Genes ENSRNOG00000057812 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000082270 ENTREZGENE
NCBI Gene LOC120097208 ENTREZGENE
PhenoGen Snora72 PhenoGen
RatGTEx ENSRNOG00000057812 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-08 Snora72  Small nucleolar RNA SNORA72  LOC120097208  small nucleolar RNA SNORA72  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120097208  small nucleolar RNA SNORA72  SNORA72  Small nucleolar RNA SNORA72  Data merged from RGD:15011298 737654 PROVISIONAL
2021-01-27 LOC120097208  small nucleolar RNA SNORA72      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 SNORA72  Small nucleolar RNA SNORA72      Symbol and Name status set to provisional 45752 PROVISIONAL