Gm24173 (predicted gene, 24173) - Rat Genome Database

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Gene: Gm24173 (predicted gene, 24173) Mus musculus
Analyze
No known orthologs.
Symbol: Gm24173
Name: predicted gene, 24173
RGD ID: 15000800
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39111,204,335 - 11,204,462 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl111,204,335 - 11,204,462 (-)EnsemblGRCm39 Ensembl
GRCm38111,134,111 - 11,134,238 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl111,134,111 - 11,134,238 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1A2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm24173
3 total Variants

Predicted Target Of
Summary Value
Count of predictions:31
Count of miRNA genes:29
Interacting mature miRNAs:31
Transcripts:ENSMUST00000104130
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 17 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse

1 to 10 of 17 rows





RefSeq Transcripts XR_004936838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000104130
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl111,204,335 - 11,204,462 (-)Ensembl
GRCm38.p6 Ensembl111,134,111 - 11,134,238 (-)Ensembl
RefSeq Acc Id: XR_004936838
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39111,204,335 - 11,204,462 (-)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000077318 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000104130 ENTREZGENE
MGD MGI:5453950 ENTREZGENE
NCBI Gene Gm24173 ENTREZGENE
PhenoGen Gm24173 PhenoGen
RNAcentral URS00006A8D64 RNACentral