Gm25572 (predicted gene, 25572) - Rat Genome Database

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Gene: Gm25572 (predicted gene, 25572) Mus musculus
Analyze
Symbol: Gm25572
Name: predicted gene, 25572
RGD ID: 15000129
MGI Page MGI
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39358,886,278 - 58,886,447 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl358,886,276 - 58,886,447 (-)EnsemblGRCm39 Ensembl
GRCm38358,978,857 - 58,979,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl358,978,855 - 58,979,026 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3DNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gm25572
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39358,886,278 - 58,886,447 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl358,886,276 - 58,886,447 (-)EnsemblGRCm39 Ensembl
GRCm38358,978,857 - 58,979,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl358,978,855 - 58,979,026 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3DNCBI
RNU2-31P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383159,808,416 - 159,808,570 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3159,808,416 - 159,808,570 (-)EnsemblGRCh38hg38GRCh38
GRCh373159,526,205 - 159,526,359 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q25.33NCBI
CHM1_13159,489,100 - 159,489,254 (-)NCBICHM1_1
T2T-CHM13v2.03162,582,990 - 162,583,144 (-)NCBIT2T-CHM13v2.0
LOC120098014
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81734,952,260 - 34,952,366 (-)NCBIGRCr8
mRatBN7.21734,743,682 - 34,743,788 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1734,743,682 - 34,743,788 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map17p12NCBI

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Variants in Gm25572
10 total Variants

Predicted Target Of
Summary Value
Count of predictions:203
Count of miRNA genes:192
Interacting mature miRNAs:202
Transcripts:ENSMUST00000157527
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 40 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse

1 to 10 of 40 rows





GenBank Nucleotide AC112998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000157527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl358,886,276 - 58,886,447 (-)Ensembl
GRCm38.p6 Ensembl358,978,855 - 58,979,026 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000088152 Ensembl, ENTREZGENE
MGD MGI:5455349 ENTREZGENE
NCBI Gene Gm25572 ENTREZGENE
PhenoGen Gm25572 PhenoGen
RNAcentral URS0000653FB4 RNACentral